Popular repositories Loading

1. hotnet2 hotnet2 Public

   HotNet2 is an algorithm for finding significantly altered subnetworks in a large gene interaction network

   Python 102 43

2. paste paste Public

   Probabilistic Alignment of Spatial Transcriptomics Experiments

   Python 87 18

3. THetA THetA Public

   Tumor Heterogeneity Analysis (THetA) and THetA2 are algorithms that estimate the tumor purity and clonal/subclonal copy number aberrations directly from high-throughput DNA sequencing data. This re…

   Python 72 33

4. hatchet hatchet Public

   HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jointly across multiple tumor samples from the same patient, a…

   Roff 69 32

5. GASTON GASTON Public

   GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data

   Python 51 5

6. chisel chisel Public

   CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links

   Python 39 13