Add comprehensive test suite for lorepy plotting functions#15
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Add comprehensive test suite for lorepy plotting functions#15
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This commit overhauls the test suite to provide more thorough coverage: **New conftest.py with shared fixtures:** - Deterministic random seeds for reproducibility - Multiple data fixtures (binary, multiclass, NaN data, edge cases) - Pre-fitted model fixtures for unit testing internal functions - Removed duplicate fixtures between test files **test_plot.py improvements:** - New TestPrepareData class: Tests for _prepare_data function including NaN handling, confounders, x_range calculation, data ordering - New TestGetAreaDf class: Tests for _get_area_df including probability sum validation, range respecting, confounders, multiclass - New TestGetDotsDf class: Tests for _get_dots_df including coordinate validation, jitter functionality, probability band verification - Improved TestLoreplot class: Tests for axis limits, dot rendering, confounders disabling dots, custom classifiers and parameters - New TestEdgeCases class: Single class, empty data, missing columns, NaN handling, inverted ranges, zero-width range edge cases **test_uncertainty.py improvements:** - New TestGetUncertaintyData class: Tests for _get_uncertainty_data (previously untested) including output structure, bounds ordering, probability ranges, multiclass support - Improved TestGetFeatureImportance: Added confidence interval, proportion validation, p-value range, interpretation format tests - Improved TestUncertaintyPlot: Added plot content verification (fill, lines), axis setup, multiclass axes count - New TestUncertaintyEdgeCases: Edge cases for iterations, jackknife fractions, string labels, NaN handling Test count increased from 27 to 91 tests, achieving 100% code coverage. https://claude.ai/code/session_01VQDpjboqTU7pr11X9tVWCX
Apply ruff and black formatting: - Remove unused imports (SVC, ListedColormap, LogisticRegression) - Apply black code formatting to test files https://claude.ai/code/session_01VQDpjboqTU7pr11X9tVWCX
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Summary
This PR significantly expands the test coverage for the lorepy package by adding a comprehensive test suite with 50+ test cases covering all major functions and edge cases.
Key Changes
New Test Infrastructure (
tests/conftest.py)binary_sample_data: Two-class classification dataset with confoundersmulticlass_sample_data: Three-class classification datasetdata_with_nan: Dataset with missing values for NaN handling testssmall_deterministic_data: Small, reproducible dataset for precise testingfitted_logistic_model/fitted_multiclass_model: Pre-fitted classifierssingle_class_data,empty_dataframe: Edge case datasetsstring_class_labels: Non-integer class labelscustom_colormap: Matplotlib colormap for visualization testsExpanded Test Coverage (
tests/test_plot.py)Reorganized and expanded from ~130 to ~523 lines with structured test classes:
TestPrepareData (7 tests)
TestGetAreaDf (7 tests)
TestGetDotsDf (7 tests)
TestLoreplot (15 tests)
TestEdgeCases (8 tests)
Implementation Details
https://claude.ai/code/session_01VQDpjboqTU7pr11X9tVWCX