Merge pull request #2998 from radical-cybertools/feature/test_slurm #607
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| name: CI | |
| on: | |
| push: | |
| branches: [ devel ] | |
| pull_request: | |
| branches: [ devel ] | |
| jobs: | |
| linting: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 2 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.7 | |
| - name: Install dependencies | |
| run: | | |
| python -m venv testenv | |
| . testenv/bin/activate | |
| python -m pip install --upgrade pip setuptools wheel | |
| python -m pip install git+https://github.com/radical-cybertools/radical.utils.git@devel | |
| python -m pip install git+https://github.com/radical-cybertools/radical.saga.git@devel | |
| python -m pip install --upgrade . | |
| python -m pip install -r requirements-tests.txt | |
| - name: Lint with flake8 and pylint | |
| run: | | |
| . testenv/bin/activate | |
| LOG=`git log -n 1 | grep Merge` || echo 'no merging' && exit 0 | |
| NEW=`echo $LOG | cut -d ' ' -f2` | |
| OLD=`echo $LOG | cut -d ' ' -f3` | |
| (test -z "$NEW" || test -z "$OLD") && echo 'nothing to lint' && exit 0 | |
| DIFF=`git diff --name-only --diff-filter=db $NEW..$OLD` | |
| FILTERED=$(for f in $DIFF; do echo $f; done | \ | |
| grep -v -e 'concepts/' -e '/archive/' | \ | |
| grep -e '\.py$' | sed "s|^|$PWD/|") | |
| test -z "$FILTERED" && echo 'nothing to lint' && exit 0 | |
| flake8 $FILTERED | |
| pylint $FILTERED | |
| notebook_integration_test: | |
| strategy: | |
| matrix: | |
| python-version: [ '3.7', '3.8', '3.9', '3.10', '3.11' ] | |
| uses: ./.github/workflows/run-rp-notebook.yml | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| notebook-name: 'getting_started.ipynb' | |
| tests: | |
| runs-on: ${{ matrix.os }} | |
| services: | |
| mongodb: | |
| image: mongo | |
| ports: | |
| - 27017/tcp | |
| strategy: | |
| matrix: | |
| os: [ ubuntu-latest ] | |
| python-version: [ '3.7', '3.8', '3.9', '3.10', '3.11' ] | |
| include: | |
| - os: ubuntu-20.04 | |
| python-version: '3.6' | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 2 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m venv testenv | |
| . testenv/bin/activate | |
| python -m pip install --upgrade pip setuptools wheel | |
| python -m pip install git+https://github.com/radical-cybertools/radical.utils.git@devel | |
| python -m pip install git+https://github.com/radical-cybertools/radical.saga.git@devel | |
| python -m pip install --upgrade . | |
| python -m pip install -r requirements-tests.txt | |
| - name: Unit tests | |
| env: | |
| RADICAL_PILOT_DBURL: mongodb://localhost:${{ job.services.mongodb.ports[27017] }}/test | |
| run: | | |
| . testenv/bin/activate | |
| coverage run --source=radical.pilot -m pytest -ra -vvv --showlocals tests/unit_tests/ tests/component_tests/ | |
| coverage xml | |
| - uses: codecov/codecov-action@v3 | |
| if: ${{ matrix.python-version == '3.7' }} | |
| with: | |
| files: ./coverage.xml | |
| # - name: Integration test | |
| # env: | |
| # MONGODB_HOST: localhost | |
| # MONGODB_PORT: ${{ job.services.mongodb.ports[27017] }} | |
| # RADICAL_PILOT_DBURL: mongodb://localhost:${{ job.services.mongodb.ports[27017] }}/test | |
| # TARGET_PATH: 'docs/source/getting_started.ipynb' | |
| # run: | | |
| # . testenv/bin/activate | |
| # python -m pip install -r requirements-docs.txt | |
| # python -m pip install jupyter | |
| # jupyter nbconvert --clear-output --inplace $TARGET_PATH | |
| # jupyter nbconvert --to notebook --execute --inplace $TARGET_PATH | |
| analytics: | |
| runs-on: ${{ matrix.os }} | |
| services: | |
| mongodb: | |
| image: mongo | |
| ports: | |
| - 27017/tcp | |
| strategy: | |
| matrix: | |
| os: [ ubuntu-latest ] | |
| python-version: [ '3.7', '3.8', '3.9', '3.10', '3.11' ] | |
| include: | |
| - os: ubuntu-20.04 | |
| python-version: '3.6' | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 2 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| sudo apt update | |
| sudo apt install -y texlive cm-super | |
| sudo apt install -y texlive-fonts-extra texlive-extra-utils dvipng | |
| sudo apt install -y texlive-fonts-recommended texlive-latex-extra | |
| python -m venv testenv | |
| . testenv/bin/activate | |
| python -m pip install --upgrade pip setuptools wheel | |
| python -m pip install git+https://github.com/radical-cybertools/radical.utils.git@devel | |
| python -m pip install git+https://github.com/radical-cybertools/radical.saga.git@devel | |
| python -m pip install --upgrade . | |
| python -m pip install git+https://github.com/radical-cybertools/radical.analytics.git@devel | |
| - name: analyze example session | |
| timeout-minutes: 5 | |
| env: | |
| RADICAL_PILOT_DBURL: mongodb://localhost:${{ job.services.mongodb.ports[27017] }}/test | |
| run: | | |
| . testenv/bin/activate | |
| ./examples/00_getting_started.py local.localhost | |
| SID=$(ls -rt | grep rp.session) | |
| echo "$SID: $SID" | |
| radical-analytics-inspect "$SID" | |
| mkdir artifacts | |
| ls -la | |
| cp -R *.png *.stats artifacts | |
| - name: upload artifacts | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: artifacts | |
| path: artifacts | |