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Trying to get ROI masks from this dataset: https://figshare.com/s/a5e09113f5c07b3047df
I had to use following hack in image_helper.py:
def get_slice_contour_data(series_slice: Dataset, contour_sequence: Sequence):
slice_contour_data = []
# Traverse through sequence data and get all contour data pertaining to the given slice
for contour in contour_sequence:
for contour_image in contour.ContourImageSequence:
if contour_image.ReferencedSOPInstanceUID == get_UID(series_slice.filename): #series_slice.SOPInstanceUID:
slice_contour_data.append(contour.ContourData)
return slice_contour_datawhere get_UID obtaines the UID from the file name. Not sure if this means the dataset is "broken", or if this is just a real problem that is not covered by rt-utils.
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