Skip to content

rt-utils fails on "Radiation therapy simulation head ..." #106

@dyollb

Description

@dyollb

Trying to get ROI masks from this dataset: https://figshare.com/s/a5e09113f5c07b3047df

I had to use following hack in image_helper.py:

def get_slice_contour_data(series_slice: Dataset, contour_sequence: Sequence):
    slice_contour_data = []

    # Traverse through sequence data and get all contour data pertaining to the given slice
    for contour in contour_sequence:
        for contour_image in contour.ContourImageSequence:
            if contour_image.ReferencedSOPInstanceUID == get_UID(series_slice.filename): #series_slice.SOPInstanceUID:
                slice_contour_data.append(contour.ContourData)

    return slice_contour_data

where get_UID obtaines the UID from the file name. Not sure if this means the dataset is "broken", or if this is just a real problem that is not covered by rt-utils.

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions