Fix #839, move setup.py metadata & config settings into pyproject.toml, & remove requirements.txt

.gemini/styleguide.md

@@ -1,23 +1,29 @@
 # qsim style guide
 
-This style guide outlines the coding conventions for this project. There are
-separate subsections for Python, C++, and other file types below.
+This style guide for Gemini outlines the coding conventions for this project.
 
 ## General guidance
 
 ### Overall principles
 
-*   _Readability_: Code should be easy to understand for all team members.
+*   _Readability_: Code must be easy for humans to understand. Prefer clarity
+    over cleverness. Write elegant, well-structured code.
 
-*   _Maintainability_: Code should be easy to modify and extend.
+*   _Maintainability_: Code must be easy to modify and extend.
 
-*   _Consistency_: Adhering to a consistent style across all projects improves
-    collaboration and reduces errors.
+*   _Consistency_: Be consistent with naming convention, style, and other
+    patterns in the code base.
 
 *   _Performance_: While readability is paramount, code should be efficient.
 
 ### Overall development approach
 
+*   Code should be modular and adhere to language idioms and best practices.
+
+*   Data obtained from the user or read from a file should be validated.
+    Identify and guard against potential vulnerabilities in data handling or
+    input validation.
+
 *   When new functions, classes, and files are introduced, they should also
     have corresponding tests. Existing tests must continue to pass (or be
     updated) when changes are introduced, and code should be covered by tests.
@@ -28,16 +34,16 @@ separate subsections for Python, C++, and other file types below.
 
 *   Tests must be independent and must not rely on the state of other tests.
     Setup and teardown functions should be used to create a clean environment
-    for each test run. External dependencies (e.g., databases, network
-    services, file system) must be mocked to ensure the test is isolated to the
-    unit under test.
+    for each test run. External dependencies (e.g., databases, network services,
+    file system) must be mocked to ensure the test is isolated to the unit under
+    test.
 
 *   Make sure to cover edge cases: write tests for invalid inputs, null values,
     empty arrays, zero values, and off-by-one errors.
 
-*   Use asserts intelligently. Test assertions should be specific: instead of
-    just asserting `true`, assert that a specific value equals an expected
-    value. Provide meaningful failure messages.
+*   Use asserts in tests intelligently. Test assertions should be specific:
+    instead of just asserting `true`, assert that a specific value equals an
+    expected value. Provide meaningful failure messages.
 
 ### Overall code format conventions
 
@@ -77,7 +83,7 @@ present at the top level of this project repository):
 
 *   [`.yamllint.yaml`](../.yamllint.yaml) for YAML files.
 
-### Overall code commenting conventions
+### Overall code comment conventions
 
 Every source file must begin with a header comment with the copyright and
 license. We use the Apache 2.0 license. Here is an example of the required file
@@ -99,23 +105,20 @@ header for a Python language code file:
 # limitations under the License.
 ```
 
-License headers are necessary on Python, C++, Bash/shell, and other programming
+License headers are necessary in Python, C++, Bash/shell, and other programming
 language files, as well as configuration files in YAML, TOML, ini, and other
 config file formats. They are not necessary in Markdown or plain text files.
 
 For comments in other parts of the files, follow these guidelines:
 
 *   _Write clear and concise comments_: Comments should explain the "why", not
-    the "what". The code itself shows what it's doing. The comments should
-    explain the intent, trade-offs, and reasoning behind the implementation.
+    the "what". The comments should explain the intent, trade-offs, and
+    reasoning behind the implementation.
 
 *   _Comment sparingly_: Well-written code should be self-documenting where
     possible. It's not necessary to add comments for code fragments that can
     reasonably be assumed to be self-explanatory.
 
-*   _Use complete sentences_: Start comments with a capital letter, use
-    proper punctuation, and use proper grammar.
-
 ## Python-specific guidance
 
 This section outlines coding conventions for Python code in this project.
@@ -161,9 +164,9 @@ naming, we can reduce cognitive load on human users and developers.
         amplitudes. If a function expects a NumPy array of amplitudes, its type
         annotation should be `np.ndarray`.
 
-###  Docstrings and documentation
+###  Python docstrings and documentation
 
-For Python code, this project uses [Google style doc strings](
+This project uses [Google style doc strings](
 http://google.github.io/styleguide/pyguide.html#381-docstrings) with a Markdown
 flavor and support for LaTeX. Docstrings use tripe double quotes, and the first
 line should be a concise one-line summary of the function or object.
@@ -227,7 +230,7 @@ The following programs can be used to perform some automated formatting.
 
 ### Python type annotations
 
-This project makes extensive use of type annotations as defined by [PEP 484](
+This project uses type annotations as defined by [PEP 484](
 https://peps.python.org/pep-0484/). All new code should use type annotations
 where possible, especially on public classes and functions to serve as
 documentation, but also on internal code so that the `mypy` type checker can
@@ -298,3 +301,14 @@ To build tests without running them, instead use:
 ```shell
 bzel build tests:all
 ```
+
+## Shell script-specific guidance
+
+Shell scripts should use Bash.
+
+### Shell script formatting
+
+Use the [Google Shell Style Guide](
+https://google.github.io/styleguide/shellguide.html) with the following changes:
+
+*   Use indentation of 4 spaces, not 2.

.github/actionlint.yaml

@@ -12,13 +12,35 @@
 # See the License for the specific language governing permissions and
 # limitations under the License.
 
-# Summary: config actionlint (https://github.com/rhysd/actionlint) for certain
-# things we use.
+# Summary: configure actionlint (https://github.com/rhysd/actionlint) to
+# recognize action runner names/labels that we use.
 
 self-hosted-runner:
-  # We don't have self-hosted runners, but we do use some of the "partner"
-  # runner images from https://github.com/actions/partner-runner-images
-  # and some runners that actionlint doesn't currently recognize.
   labels:
+    # Defined in Quantumlib org.
+    - ubuntu-22.04-arm64-2-core
+    - ubuntu-22.04-arm64-8-core
+    - ubuntu-22.04-arm64-16-core
+
+    - ubuntu-22.04-x64-2-core
+    - ubuntu-22.04-x64-8-core
+    - ubuntu-22.04-x64-16-core
+
+    - ubuntu-24.04-arm64-2-core
+    - ubuntu-24.04-arm64-8-core
+    - ubuntu-24.04-arm64-16-core
+
+    - ubuntu-24.04-x64-2-core
+    - ubuntu-24.04-x64-8-core
+    - ubuntu-24.04-x64-16-core
+
+    - windows-2022-x64-8-core
+    - windows-2025-x64-8-core
+    - windows-2025-x64-16-core
+
+    # From https://github.com/actions/partner-runner-images
     - ubuntu-24.04-arm
+
+    # New from GitHub (late 2025) but currently not known by actionlint.
+    # https://docs.github.com/en/actions/reference/runners/github-hosted-runners
     - ubuntu-slim

.github/workflows/ci.yaml

@@ -67,16 +67,18 @@
           fetch-depth: 0
 
       - name: Set up Python
-        uses: actions/setup-python@e797f83bcb11b83ae66e0230d6156d7c80228e7c # v5
+        uses: actions/setup-python@83679a892e2d95755f2dac6acb0bfd1e9ac5d548 # v5
         with:
           python-version: ${{env.python-version}}
           cache: pip
-          cache-dependency-path: |
-            requirements.txt
-            dev-requirements.txt
+
+      - name: Upgrade pip
+        run: python -m pip install --upgrade pip
 
       - name: Install dependencies
-        run: pip install -r requirements.txt -r dev-requirements.txt
+        run: |
+          pip install -r requirements.txt
+          pip install --group dev
 
       - name: Check format
         continue-on-error: ${{inputs.soft-linting == 'true'}}
@@ -230,17 +232,19 @@
           submodules: recursive
 
       - name: Set up Python
-        uses: actions/setup-python@e797f83bcb11b83ae66e0230d6156d7c80228e7c # v5
+        uses: actions/setup-python@83679a892e2d95755f2dac6acb0bfd1e9ac5d548 # v5
         id: setup
         with:
           python-version: ${{matrix.python_version}}
           cache: pip
-          cache-dependency-path: |
-            requirements.txt
-            dev-requirements.txt
+
+      - name: Upgrade pip
+        run: python -m pip install --upgrade pip
 
       - name: Install dependencies
-        run: pip install -r requirements.txt -r dev-requirements.txt
+        run: |
+          pip install -r requirements.txt
+          pip install --group dev
 
       - name: Set up Bazel
         uses: './.github/actions/set-up-bazel'
@@ -316,16 +320,18 @@
           submodules: recursive
 
       - name: Set up Python
-        uses: actions/setup-python@e797f83bcb11b83ae66e0230d6156d7c80228e7c # v5
+        uses: actions/setup-python@83679a892e2d95755f2dac6acb0bfd1e9ac5d548 # v5
         with:
           python-version: ${{env.python-version}}
           cache: pip
-          cache-dependency-path: |
-            requirements.txt
-            dev-requirements.txt
+
+      - name: Upgrade pip
+        run: python -m pip install --upgrade pip
 
       - name: Install dependencies
-        run: pip install -r requirements.txt -r dev-requirements.txt
+        run: |
+          pip install -r requirements.txt
+          pip install --group dev
 
       - name: Set up Bazel
         uses: './.github/actions/set-up-bazel'
@@ -371,16 +377,18 @@
           submodules: recursive
 
       - name: Set up Python
-        uses: actions/setup-python@e797f83bcb11b83ae66e0230d6156d7c80228e7c # v5
+        uses: actions/setup-python@83679a892e2d95755f2dac6acb0bfd1e9ac5d548 # v5
         with:
           python-version: ${{env.python-version}}
           cache: pip
-          cache-dependency-path: |
-            requirements.txt
-            dev-requirements.txt
+
+      - name: Upgrade pip
+        run: python -m pip install --upgrade pip
 
       - name: Install dependencies
-        run: pip install -r requirements.txt -r dev-requirements.txt
+        run: |
+          pip install -r requirements.txt
+          pip install --group dev
 
       - name: Set up Bazel
         uses: './.github/actions/set-up-bazel'

.github/workflows/cirq_compatibility.yml

@@ -46,21 +46,21 @@
           submodules: recursive
 
       - name: Set up Python with caching of pip dependencies
-        uses: actions/setup-python@e797f83bcb11b83ae66e0230d6156d7c80228e7c # v5
+        uses: actions/setup-python@83679a892e2d95755f2dac6acb0bfd1e9ac5d548 # v5
         with:
           python-version: '3.12'
           cache: pip
-          cache-dependency-path: |
-            requirements.txt
-            dev-requirements.txt
+
+      - name: Upgrade pip
+        run: python -m pip install --upgrade pip
 
       - name: Install latest dev version of Cirq
         run: pip install --upgrade cirq~=1.0.dev
 
-      - name: Install qsim dev requirements
+      - name: Install dependencies
         run: |
           pip install -r requirements.txt
-          pip install -r dev-requirements.txt
+          pip install --group dev
 
       - name: Run Python tests
         env: