some updates

CHANGELOG.md

@@ -1,6 +1,6 @@
 # Qiita changelog
 
-Version 2024.02
+Version 2024.07
 ---------------
 
 Deployed on July 15th, 2024
@@ -16,6 +16,7 @@ Deployed on July 15th, 2024
 * Added `current_human_filtering` to the prep-information and `human_reads_filter_method` to the artifact to keep track of the method that it was used to human reads filter the raw artifact and know if it's up to date with what is expected via the best practices.
 * Added `reprocess_job_id` to the prep-information so we keep track if a preparation has been reprocessed with another job.
 * Other general fixes, like [#3385](https://github.com/qiita-spots/qiita/pull/3385), [#3397](https://github.com/qiita-spots/qiita/pull/3397), [#3399](https://github.com/qiita-spots/qiita/pull/3399), [#3400](https://github.com/qiita-spots/qiita/pull/3400), [#3409](https://github.com/qiita-spots/qiita/pull/3409), [#3410](https://github.com/qiita-spots/qiita/pull/3410).
+* On June 14th, 2024 we modified the SPP to use XXXX to filter human-reads from the per-sample-FASTQ loaded to Qiita.
 
 
 Version 2024.02

qiita_db/util.py

@@ -49,13 +49,13 @@
 from bcrypt import hashpw, gensalt
 from functools import partial
 from os.path import join, basename, isdir, exists, getsize
-from os import walk, remove, listdir, rename, stat
+from os import walk, remove, listdir, rename, stat, makedirs
 from glob import glob
 from shutil import move, rmtree, copy as shutil_copy
 from openpyxl import load_workbook
 from tempfile import mkstemp
 from csv import writer as csv_writer
-from datetime import datetime
+from datetime import datetime, timedelta
 from time import time as now
 from itertools import chain
 from contextlib import contextmanager
@@ -64,18 +64,15 @@
 import hashlib
 from smtplib import SMTP, SMTP_SSL, SMTPException
 
-from os import makedirs
 from errno import EEXIST
 from qiita_core.exceptions import IncompetentQiitaDeveloperError
 from qiita_core.qiita_settings import qiita_config
 from subprocess import check_output
 import qiita_db as qdb
 
-
 from email.mime.multipart import MIMEMultipart
 from email.mime.text import MIMEText
 
-from datetime import timedelta
 import matplotlib.pyplot as plt
 import numpy as np
 import pandas as pd
@@ -2742,7 +2739,7 @@ def update_resource_allocation_table(weeks=1, test=None):
                 slurm_external_id = sei
             if sd is not None:
                 start_date = sd
-        dates = [start_date, start_date + timedelta(weeks)]
+        dates = [start_date, start_date + timedelta(weeks=weeks)]
 
     sql_command = """
             SELECT
@@ -2780,8 +2777,9 @@ def update_resource_allocation_table(weeks=1, test=None):
     sacct = [
         'sacct', '-p',
         '--format=JobID,ElapsedRaw,MaxRSS,Submit,Start,End,CPUTimeRAW,'
-        'ReqMem,AllocCPUs,AveVMSize', '--starttime', dates[0], '--endtime',
-        dates[1], '--user', 'qiita', '--state', 'CD']
+        'ReqMem,AllocCPUs,AveVMSize', '--starttime',
+        dates[0].strftime('%Y-%m-%d'), '--endtime',
+        dates[1].strftime('%Y-%m-%d'), '--user', 'qiita', '--state', 'CD']
 
     if test is not None:
         slurm_data = test