Upstream master 0502018 #2577
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Upstream master 0502018 #2577
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* fix Keemei * delete keemei * keemei delete
@ackeramag and @stephanieorch I didn't add the new EBI column titles since this is no longer in the help documentation. We can consider adding it back for the next release, but ideally the Metadata Wizard will handle this for us as of the next release.
* fix qiita-spots#1067 * addressing @ElDeveloper comments * fix qiita-spots#2512 * fix qiita-spots#1999 (qiita-spots#2514) * fix qiita-spots#1999 * fix template error * rm maintenance conditional * some improvements * fix qiita-spots#1053 * addressing @ElDeveloper comments * adding secret * WIP: EBI-ENA test (qiita-spots#2516) * fix Keemei (qiita-spots#2510) * rename preprocessed_data_id artifact-id * prints to debug * Keemei fix (qiita-spots#2517) * fix Keemei * delete keemei * keemei delete * rewrite_fastq=True * rmtree * add : * testing EBI * add secure * travis tests * @ElDeveloper key! * Fix typo * fix secure * rm single quote * Fix 2321 (qiita-spots#2522) * fix Keemei (qiita-spots#2510) * fix qiita-spots#2321 * fixing get studies * fix qiita_db * addressing @ElDeveloper comments * fixing error with skipIf * Illumina models 0318 (qiita-spots#2532) * fix Keemei (qiita-spots#2510) * updating illumina models * adding secure * Update index.rst (qiita-spots#2533) * fix Keemei (qiita-spots#2510) * Keemei fix (qiita-spots#2517) * fix Keemei * delete keemei * keemei delete * Update index.rst * Plugin API Doc (qiita-spots#2534) * fix Keemei (qiita-spots#2510) * plugin-api * improve format * Fix 1810 (qiita-spots#2523) * fix Keemei (qiita-spots#2510) * fix qiita-spots#2321 * fixing get studies * fix qiita_db * fix qiita-spots#1810 * adding self.ascp_pass * fix flake8 * flake8 * DOC: Cleanup of JavaScript libraries and licenses (qiita-spots#2536) * DOC: Cleanup of JavaScript libraries and licenses There were a few JavaScript files that were not used anywhere and we were missing a handful of license files. I've cleaned up all of that (and for consistency made all the "licence" into "license"). Fixes qiita-spots#2535 * DOC: Document all the JS files * BUG: Add natural sorting for data tables * adding initial download/redbiom info * adding docs * addressing @ElDeveloper comments * Fix aid str workflow (qiita-spots#2537) * fix Keemei (qiita-spots#2510) * fix int/str errors with workflows * adding a patch to fix all ints parameters * all -> any patch 64 * fix qiita-spots#2519 * fix qiita-spots#2524 * fix qiita-spots#2531 * fix qiita-spots#2529 * split qiita-cron-job into multiple commands * rm leftover docs * Update downloading.rst * fix_reference_order (qiita-spots#2547) * addressing @stephanieorch comments * addressing @ElDeveloper comments * Fix 2492 (qiita-spots#2544) * fix Keemei (qiita-spots#2510) * fix qiita-spots#2492 * flake8 * Redbiom -> redbiom @wasade * addressing @wasade comments * Update .travis.yml * Fix 2505 (qiita-spots#2545) * fix Keemei (qiita-spots#2510) * fix qiita-spots#2505 * fix errors * '' -> 'not provided' * Fix 2530 (qiita-spots#2546) * fix qiita-spots#2530 * fix errors * missed 1 error * more erros * fix-secure * improve available files display
* fix master * fix ebi errors in master * fix pep8 * fix error
Codecov Report
@@ Coverage Diff @@
## dev #2577 +/- ##
=======================================
Coverage 94.42% 94.42%
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Files 160 160
Lines 19477 19477
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Hits 18391 18391
Misses 1086 1086Continue to review full report at Codecov.
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tanaes
approved these changes
May 2, 2018
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