Fix prep summary EBI message #1809
Merged
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
This line assumes that the call
pt.ebi_experiment_accessionsreturns None (or an empty dict) if the prep information is not in EBI. However,pt.ebi_experiment_accessionsreturns a dict in which the key is the sample ids and the values areNoneif it has not been submitted to EBI.Since the EBI experiment accessions are not shown in the interface, it is enough to ask directly to the template if it has been submitted or not.