Creating generate_files function #1062
Merged
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There was a lot of code duplication across the sample/prep template classes to generate the files; and in case of the sample template, there was a bug, since the extend function was modifying the contents of the template but it was not re-generating the qiime mapping file. There is another bug on the extend function, but I'll fix it in a different PR.
That being said, I just created a new function to encapsulate all the files creation and I removed the duplicated code and substitute it for a call to the new function.