EBI submission of metagenomic data

[ackermag]

Right now we can only submit after demux - demux of per sample fastq applies quality filtering for 16S - not appropriate for shotgun. What do we need to do to submit per sample fastq to EBI? Add a button?

[ackermag]

I need to do this now for Katie (study 11212 prep 3580). Is this a hard fix?

[antgonza]

Not sure. My suggestion will be to try it by hand first so we can assess complexity and validity of fields, let's discuss internally to set a date to do this by hand submission.

[antgonza]

closed here: #2303