Enable NanoporeParser to validate and parse pod5 based nanopore structures#126
Merged
Steffengreiner merged 3 commits intoNov 3, 2023
Conversation
wow-such-code
approved these changes
Nov 3, 2023
Steffengreiner
deleted the
feature/dm-1003-nanopore-dorado-basecaller-pod5-parser-support
branch
Merged
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
2 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
What was changed
In the newer versions nanopore switched from generating fast5 files to a pod5 format. This major change necessitates a change in how we validate and parse the datastructures provided by us from the partner labs to ensure backwards compability.