Adapt to new TopoNetX import convention #57
Workflow file for this run
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| name: "Testing Tutorials" | |
| on: | |
| workflow_dispatch: | |
| push: | |
| branches: [main,github-actions-test] | |
| paths-ignore: | |
| - 'docs/**' | |
| - 'README.md' | |
| - 'LICENSE.txt' | |
| - '.gitignore' | |
| pull_request: | |
| branches: [main] | |
| paths-ignore: | |
| - 'docs/**' | |
| - 'README.md' | |
| - 'LICENSE.txt' | |
| - '.gitignore' | |
| # Disable debugger's warnings from nbconvert in test_tutorials.py | |
| env: | |
| PYDEVD_DISABLE_FILE_VALIDATION: 1 | |
| jobs: | |
| simplicial-pytest: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ["3.10", "3.11"] | |
| torch-version: [2.0.1] | |
| include: | |
| - torch-version: 2.0.1 | |
| test-group: [1, 2, 3, 4] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: "pip" | |
| cache-dependency-path: "pyproject.toml" | |
| - name: Install PyTorch ${{ matrix.torch-version }}+cpu | |
| run: | | |
| pip install --upgrade pip setuptools wheel | |
| pip install torch==${{ matrix.torch-version}} --extra-index-url https://download.pytorch.org/whl/cpu | |
| pip install torch-scatter -f https://data.pyg.org/whl/torch-${{ matrix.torch-version }}+cpu.html | |
| pip install torch-sparse -f https://data.pyg.org/whl/torch-${{ matrix.torch-version }}+cpu.html | |
| pip install torch-cluster -f https://data.pyg.org/whl/torch-${{ matrix.torch-version }}+cpu.html | |
| - name: Install main package | |
| run: | | |
| pip install -e .[all] | |
| - name: Run tests for tutorials on simplicial domain [pytest] [Group-${{ matrix.test-group}}] | |
| run: | | |
| pytest --splits 4 --group ${{ matrix.test-group}} test/tutorials/test_simplicial.py | |
| hypergraph-pytest: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ["3.10", "3.11"] | |
| torch-version: [2.0.1] | |
| include: | |
| - torch-version: 2.0.1 | |
| test-group: [1, 2, 3] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: "pip" | |
| cache-dependency-path: "pyproject.toml" | |
| - name: Install PyTorch ${{ matrix.torch-version }}+cpu | |
| run: | | |
| pip install --upgrade pip setuptools wheel | |
| pip install torch==${{ matrix.torch-version}} --extra-index-url https://download.pytorch.org/whl/cpu | |
| pip install torch-scatter -f https://data.pyg.org/whl/torch-${{ matrix.torch-version }}+cpu.html | |
| pip install torch-sparse -f https://data.pyg.org/whl/torch-${{ matrix.torch-version }}+cpu.html | |
| pip install torch-cluster -f https://data.pyg.org/whl/torch-${{ matrix.torch-version }}+cpu.html | |
| - name: Install main package | |
| run: | | |
| pip install -e .[all] | |
| - name: Run tests for tutorials on hypergraph domain [pytest] [Group-${{ matrix.test-group}}] | |
| run: | | |
| pytest --splits 3 --group ${{ matrix.test-group}} test/tutorials/test_hypergraph.py | |
| cell-pytest: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ["3.10", "3.11"] | |
| torch-version: [2.0.1] | |
| include: | |
| - torch-version: 2.0.1 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: "pip" | |
| cache-dependency-path: "pyproject.toml" | |
| - name: Install PyTorch ${{ matrix.torch-version }}+cpu | |
| run: | | |
| pip install --upgrade pip setuptools wheel | |
| pip install torch==${{ matrix.torch-version}} --extra-index-url https://download.pytorch.org/whl/cpu | |
| pip install torch-scatter -f https://data.pyg.org/whl/torch-${{ matrix.torch-version }}+cpu.html | |
| pip install torch-sparse -f https://data.pyg.org/whl/torch-${{ matrix.torch-version }}+cpu.html | |
| pip install torch-cluster -f https://data.pyg.org/whl/torch-${{ matrix.torch-version }}+cpu.html | |
| - name: Install main package | |
| run: | | |
| pip install -e .[all] | |
| - name: Run tests for tutorials on cell domains [pytest] | |
| run: | | |
| pytest test/tutorials/test_cell.py | |
| combinatorial-pytest: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ["3.10", "3.11"] | |
| torch-version: [2.0.1] | |
| include: | |
| - torch-version: 2.0.1 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: "pip" | |
| cache-dependency-path: "pyproject.toml" | |
| - name: Install PyTorch ${{ matrix.torch-version }}+cpu | |
| run: | | |
| pip install --upgrade pip setuptools wheel | |
| pip install torch==${{ matrix.torch-version}} --extra-index-url https://download.pytorch.org/whl/cpu | |
| pip install torch-scatter -f https://data.pyg.org/whl/torch-${{ matrix.torch-version }}+cpu.html | |
| pip install torch-sparse -f https://data.pyg.org/whl/torch-${{ matrix.torch-version }}+cpu.html | |
| pip install torch-cluster -f https://data.pyg.org/whl/torch-${{ matrix.torch-version }}+cpu.html | |
| - name: Install main package | |
| run: | | |
| pip install -e .[all] | |
| - name: Run tests for tutorials on combinatorial domains [pytest] | |
| run: | | |
| pytest test/tutorials/test_combinatorial.py |