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pipenv install --deploy --system creates virtualenv and then fails #4344

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matthewfranglen opened this issue Jun 15, 2020 · 8 comments
Closed

pipenv install --deploy --system creates virtualenv and then fails #4344

matthewfranglen opened this issue Jun 15, 2020 · 8 comments
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Status: Awaiting Update ⏳ This issue requires more information before assistance can be provided. Status: Needs More Information This issue does not provide enough information to take further action.

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@matthewfranglen
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Issue description

I want to create an AMI to run some python code.
I do not want a virtualenv as the entire AMI is just to run this code.
I do not want to check the dependencies in any way, they were checked during development.

So I run the following script:

#!/bin/bash

set -euo pipefail

sudo yum -y update
sudo yum -y install python37 python37-pip htop
sudo pip3 install pipenv
sudo ln -s /usr/local/bin/pipenv /bin/pipenv

cd /home/ec2-user/
sudo pipenv install --deploy --system

The Pipfile and Pipfile.lock have already been copied over.
It fails to install the dependencies with the following message:

    amazon-ebs: Installing dependencies from Pipfile.lock (a0b2b9)…
    amazon-ebs: Failed to load paths: /bin/sh: /root/.local/share/virtualenvs/ec2-user-zzkNbF-x/bin/python: No such file or directory
    amazon-ebs:
    amazon-ebs: Output:
    amazon-ebs: Failed to load paths: /bin/sh: /root/.local/share/virtualenvs/ec2-user-zzkNbF-x/bin/python: No such file or directory
    amazon-ebs:
    amazon-ebs: Output:
    amazon-ebs: Failed to load paths: /bin/sh: /root/.local/share/virtualenvs/ec2-user-zzkNbF-x/bin/python: No such file or directory
    amazon-ebs:
    amazon-ebs: Output:
==> amazon-ebs: Traceback (most recent call last):
==> amazon-ebs:   File "/bin/pipenv", line 11, in <module>
==> amazon-ebs:     sys.exit(cli())
==> amazon-ebs:   File "/usr/local/lib/python3.7/site-packages/pipenv/vendor/click/core.py", line 829, in __call__
==> amazon-ebs:     return self.main(*args, **kwargs)
==> amazon-ebs:   File "/usr/local/lib/python3.7/site-packages/pipenv/vendor/click/core.py", line 782, in main
==> amazon-ebs:     rv = self.invoke(ctx)
==> amazon-ebs:   File "/usr/local/lib/python3.7/site-packages/pipenv/vendor/click/core.py", line 1259, in invoke
==> amazon-ebs:     return _process_result(sub_ctx.command.invoke(sub_ctx))
==> amazon-ebs:   File "/usr/local/lib/python3.7/site-packages/pipenv/vendor/click/core.py", line 1066, in invoke
==> amazon-ebs:     return ctx.invoke(self.callback, **ctx.params)
==> amazon-ebs:   File "/usr/local/lib/python3.7/site-packages/pipenv/vendor/click/core.py", line 610, in invoke
==> amazon-ebs:     return callback(*args, **kwargs)
==> amazon-ebs:   File "/usr/local/lib/python3.7/site-packages/pipenv/vendor/click/decorators.py", line 73, in new_func
==> amazon-ebs:     return ctx.invoke(f, obj, *args, **kwargs)
==> amazon-ebs:   File "/usr/local/lib/python3.7/site-packages/pipenv/vendor/click/core.py", line 610, in invoke
==> amazon-ebs:     return callback(*args, **kwargs)
==> amazon-ebs:   File "/usr/local/lib/python3.7/site-packages/pipenv/vendor/click/decorators.py", line 21, in new_func
==> amazon-ebs:     return f(get_current_context(), *args, **kwargs)
==> amazon-ebs:   File "/usr/local/lib/python3.7/site-packages/pipenv/cli/command.py", line 252, in install
==> amazon-ebs:     site_packages=state.site_packages
==> amazon-ebs:   File "/usr/local/lib/python3.7/site-packages/pipenv/core.py", line 2062, in do_install
==> amazon-ebs:     keep_outdated=keep_outdated
==> amazon-ebs:   File "/usr/local/lib/python3.7/site-packages/pipenv/core.py", line 1314, in do_init
==> amazon-ebs:     pypi_mirror=pypi_mirror,
==> amazon-ebs:   File "/usr/local/lib/python3.7/site-packages/pipenv/core.py", line 872, in do_install_dependencies
==> amazon-ebs:     normal_deps, procs, failed_deps_queue, requirements_dir, **install_kwargs
==> amazon-ebs:   File "/usr/local/lib/python3.7/site-packages/pipenv/core.py", line 786, in batch_install
==> amazon-ebs:     use_pep517=use_pep517,
==> amazon-ebs:   File "/usr/local/lib/python3.7/site-packages/pipenv/core.py", line 1494, in pip_install
==> amazon-ebs:     pip_command = [which_pip(allow_global=allow_global), "install"]
==> amazon-ebs:   File "/usr/local/lib/python3.7/site-packages/pipenv/core.py", line 1610, in which_pip
==> amazon-ebs:     pip = which("pip")
==> amazon-ebs:   File "/usr/local/lib/python3.7/site-packages/pipenv/core.py", line 97, in which
==> amazon-ebs:     raise RuntimeError("location not created nor specified")
==> amazon-ebs: RuntimeError: location not created nor specified

If I change --deploy to --ignore-pipfile the same error occurs.
I can't use --ignore-outdated as that triggers a separate error:

==> amazon-ebs: Warning: --system is intended to be used for Pipfile installation, not installation of specific packages. Aborting.
==> amazon-ebs: ERROR:: See also: --deploy flag.

Expected result

I don't want a virtualenv.
The system python works, just install the dependencies.
The system pip works as that is how I installed pipenv.

What combination of flags achieves this?

Actual result

Installing dependencies from Pipfile.lock (a0b2b9)…
Failed to load paths: /bin/sh: /root/.local/share/virtualenvs/ec2-user-zzkNbF-x/bin/python: No such file or directory

Output:
Failed to load paths: /bin/sh: /root/.local/share/virtualenvs/ec2-user-zzkNbF-x/bin/python: No such file or directory

Output:
Failed to load paths: /bin/sh: /root/.local/share/virtualenvs/ec2-user-zzkNbF-x/bin/python: No such file or directory

Output:
Writing supplied requirement line to temporary file: 'boto3==1.14.2 --hash=sha256:a33e465831fb95af2e57576927f33746be620ba236252f8e1291c1c31cf63625 --hash=sha256:caa4fbb9de8d8c229a183a551cb314fe208ec264545d4d825022d863d33e9b7b'
Installing 'boto3'
Traceback (most recent call last):
  File "/bin/pipenv", line 11, in <module>
    sys.exit(cli())
  File "/usr/local/lib/python3.7/site-packages/pipenv/vendor/click/core.py", line 829, in __call__
    return self.main(*args, **kwargs)
  File "/usr/local/lib/python3.7/site-packages/pipenv/vendor/click/core.py", line 782, in main
    rv = self.invoke(ctx)
  File "/usr/local/lib/python3.7/site-packages/pipenv/vendor/click/core.py", line 1259, in invoke
    return _process_result(sub_ctx.command.invoke(sub_ctx))
  File "/usr/local/lib/python3.7/site-packages/pipenv/vendor/click/core.py", line 1066, in invoke
    return ctx.invoke(self.callback, **ctx.params)
  File "/usr/local/lib/python3.7/site-packages/pipenv/vendor/click/core.py", line 610, in invoke
    return callback(*args, **kwargs)
  File "/usr/local/lib/python3.7/site-packages/pipenv/vendor/click/decorators.py", line 73, in new_func
    return ctx.invoke(f, obj, *args, **kwargs)
  File "/usr/local/lib/python3.7/site-packages/pipenv/vendor/click/core.py", line 610, in invoke
    return callback(*args, **kwargs)
  File "/usr/local/lib/python3.7/site-packages/pipenv/vendor/click/decorators.py", line 21, in new_func
    return f(get_current_context(), *args, **kwargs)
  File "/usr/local/lib/python3.7/site-packages/pipenv/cli/command.py", line 252, in install
    site_packages=state.site_packages
  File "/usr/local/lib/python3.7/site-packages/pipenv/core.py", line 2062, in do_install
    keep_outdated=keep_outdated
  File "/usr/local/lib/python3.7/site-packages/pipenv/core.py", line 1314, in do_init
    pypi_mirror=pypi_mirror,
  File "/usr/local/lib/python3.7/site-packages/pipenv/core.py", line 872, in do_install_dependencies
    normal_deps, procs, failed_deps_queue, requirements_dir, **install_kwargs
  File "/usr/local/lib/python3.7/site-packages/pipenv/core.py", line 786, in batch_install
    use_pep517=use_pep517,
  File "/usr/local/lib/python3.7/site-packages/pipenv/core.py", line 1494, in pip_install
    pip_command = [which_pip(allow_global=allow_global), "install"]
  File "/usr/local/lib/python3.7/site-packages/pipenv/core.py", line 1610, in which_pip
    pip = which("pip")
  File "/usr/local/lib/python3.7/site-packages/pipenv/core.py", line 97, in which
    raise RuntimeError("location not created nor specified")
RuntimeError: location not created nor specified

Steps to replicate

Provide the steps to replicate (which usually at least includes the commands and the Pipfile).

$ pipenv --support

Pipenv version: '2020.6.2'

Pipenv location: '/usr/local/lib/python3.7/site-packages/pipenv'

Python location: '/usr/bin/python3'

Python installations found:

  • 3.7.6: /bin/python3
  • 3.7.6: /bin/python3.7
  • 3.7.6: /bin/python3.7m
  • 3.7.6: /usr/bin/python3
  • 3.7.6: /usr/bin/python3.7
  • 3.7.6: /usr/bin/python3.7m
  • 2.7.18: /bin/python2
  • 2.7.18: /bin/python2.7
  • 2.7.18: /usr/bin/python2
  • 2.7.18: /usr/bin/python2.7

PEP 508 Information:

{'implementation_name': 'cpython',
 'implementation_version': '3.7.6',
 'os_name': 'posix',
 'platform_machine': 'x86_64',
 'platform_python_implementation': 'CPython',
 'platform_release': '4.14.177-139.254.amzn2.x86_64',
 'platform_system': 'Linux',
 'platform_version': '#1 SMP Thu May 7 18:48:23 UTC 2020',
 'python_full_version': '3.7.6',
 'python_version': '3.7',
 'sys_platform': 'linux'}

System environment variables:

  • MAIL
  • LANG
  • PATH
  • LOGNAME
  • USER
  • USERNAME
  • HOME
  • SHELL
  • TERM
  • SUDO_COMMAND
  • SUDO_USER
  • SUDO_UID
  • SUDO_GID
  • XDG_SESSION_ID
  • PIP_DISABLE_PIP_VERSION_CHECK
  • PYTHONDONTWRITEBYTECODE
  • PIP_SHIMS_BASE_MODULE
  • PIP_PYTHON_PATH
  • PYTHONFINDER_IGNORE_UNSUPPORTED

Pipenv–specific environment variables:

Debug–specific environment variables:

  • PATH: /sbin:/bin:/usr/sbin:/usr/bin
  • SHELL: /bin/bash
  • LANG: en_US.UTF-8

Contents of Pipfile ('/home/ec2-user/Pipfile'):

[[source]]
name = "pypi"
url = "https://pypi.org/simple"
verify_ssl = true

[dev-packages]
black = "==19.10b0"
pylint = "*"
isort = "*"
jupyterlab = "*"

[packages]
requests = "*"
pyarrow = "*"
boto3 = "*"
pandas = "*"
s3fs = "*"
typer = "*"

[requires]
python_version = "3.7"

Contents of Pipfile.lock ('/home/ec2-user/Pipfile.lock'):

{
    "_meta": {
        "hash": {
            "sha256": "f617c95a9fc21653133fb11f8fe2c17829d9b54f31d629f0824af9efa6a0b2b9"
        },
        "pipfile-spec": 6,
        "requires": {
            "python_version": "3.7"
        },
        "sources": [
            {
                "name": "pypi",
                "url": "https://pypi.org/simple",
                "verify_ssl": true
            }
        ]
    },
    "default": {
        "boto3": {
            "hashes": [
                "sha256:a33e465831fb95af2e57576927f33746be620ba236252f8e1291c1c31cf63625",
                "sha256:caa4fbb9de8d8c229a183a551cb314fe208ec264545d4d825022d863d33e9b7b"
            ],
            "index": "pypi",
            "version": "==1.14.2"
        },
        "botocore": {
            "hashes": [
                "sha256:01788bfa280397ba96991cd74e706628620310c7d8b8b43b0818df3bad3daaeb",
                "sha256:4e347b77e17c5a619afd59a5209b251107c3d7d5f842ec169694492f3820f75b"
            ],
            "version": "==1.17.2"
        },
        "certifi": {
            "hashes": [
                "sha256:5ad7e9a056d25ffa5082862e36f119f7f7cec6457fa07ee2f8c339814b80c9b1",
                "sha256:9cd41137dc19af6a5e03b630eefe7d1f458d964d406342dd3edf625839b944cc"
            ],
            "version": "==2020.4.5.2"
        },
        "chardet": {
            "hashes": [
                "sha256:84ab92ed1c4d4f16916e05906b6b75a6c0fb5db821cc65e70cbd64a3e2a5eaae",
                "sha256:fc323ffcaeaed0e0a02bf4d117757b98aed530d9ed4531e3e15460124c106691"
            ],
            "version": "==3.0.4"
        },
        "click": {
            "hashes": [
                "sha256:d2b5255c7c6349bc1bd1e59e08cd12acbbd63ce649f2588755783aa94dfb6b1a",
                "sha256:dacca89f4bfadd5de3d7489b7c8a566eee0d3676333fbb50030263894c38c0dc"
            ],
            "version": "==7.1.2"
        },
        "docutils": {
            "hashes": [
                "sha256:6c4f696463b79f1fb8ba0c594b63840ebd41f059e92b31957c46b74a4599b6d0",
                "sha256:9e4d7ecfc600058e07ba661411a2b7de2fd0fafa17d1a7f7361cd47b1175c827",
                "sha256:a2aeea129088da402665e92e0b25b04b073c04b2dce4ab65caaa38b7ce2e1a99"
            ],
            "version": "==0.15.2"
        },
        "fsspec": {
            "hashes": [
                "sha256:1f9391c9b6e92a89949f0b0f7154b8b62a01f00b9c2767797d94ffa376dae9ab",
                "sha256:7075fde6d617cd3a97eac633d230d868121a188a46d16a0dcb484eea0cf2b955"
            ],
            "version": "==0.7.4"
        },
        "idna": {
            "hashes": [
                "sha256:7588d1c14ae4c77d74036e8c22ff447b26d0fde8f007354fd48a7814db15b7cb",
                "sha256:a068a21ceac8a4d63dbfd964670474107f541babbd2250d61922f029858365fa"
            ],
            "version": "==2.9"
        },
        "jmespath": {
            "hashes": [
                "sha256:b85d0567b8666149a93172712e68920734333c0ce7e89b78b3e987f71e5ed4f9",
                "sha256:cdf6525904cc597730141d61b36f2e4b8ecc257c420fa2f4549bac2c2d0cb72f"
            ],
            "version": "==0.10.0"
        },
        "numpy": {
            "hashes": [
                "sha256:0172304e7d8d40e9e49553901903dc5f5a49a703363ed756796f5808a06fc233",
                "sha256:34e96e9dae65c4839bd80012023aadd6ee2ccb73ce7fdf3074c62f301e63120b",
                "sha256:3676abe3d621fc467c4c1469ee11e395c82b2d6b5463a9454e37fe9da07cd0d7",
                "sha256:3dd6823d3e04b5f223e3e265b4a1eae15f104f4366edd409e5a5e413a98f911f",
                "sha256:4064f53d4cce69e9ac613256dc2162e56f20a4e2d2086b1956dd2fcf77b7fac5",
                "sha256:4674f7d27a6c1c52a4d1aa5f0881f1eff840d2206989bae6acb1c7668c02ebfb",
                "sha256:7d42ab8cedd175b5ebcb39b5208b25ba104842489ed59fbb29356f671ac93583",
                "sha256:965df25449305092b23d5145b9bdaeb0149b6e41a77a7d728b1644b3c99277c1",
                "sha256:9c9d6531bc1886454f44aa8f809268bc481295cf9740827254f53c30104f074a",
                "sha256:a78e438db8ec26d5d9d0e584b27ef25c7afa5a182d1bf4d05e313d2d6d515271",
                "sha256:a7acefddf994af1aeba05bbbafe4ba983a187079f125146dc5859e6d817df824",
                "sha256:a87f59508c2b7ceb8631c20630118cc546f1f815e034193dc72390db038a5cb3",
                "sha256:ac792b385d81151bae2a5a8adb2b88261ceb4976dbfaaad9ce3a200e036753dc",
                "sha256:b03b2c0badeb606d1232e5f78852c102c0a7989d3a534b3129e7856a52f3d161",
                "sha256:b39321f1a74d1f9183bf1638a745b4fd6fe80efbb1f6b32b932a588b4bc7695f",
                "sha256:cae14a01a159b1ed91a324722d746523ec757357260c6804d11d6147a9e53e3f",
                "sha256:cd49930af1d1e49a812d987c2620ee63965b619257bd76eaaa95870ca08837cf",
                "sha256:e15b382603c58f24265c9c931c9a45eebf44fe2e6b4eaedbb0d025ab3255228b",
                "sha256:e91d31b34fc7c2c8f756b4e902f901f856ae53a93399368d9a0dc7be17ed2ca0",
                "sha256:ef627986941b5edd1ed74ba89ca43196ed197f1a206a3f18cc9faf2fb84fd675",
                "sha256:f718a7949d1c4f622ff548c572e0c03440b49b9531ff00e4ed5738b459f011e8"
            ],
            "version": "==1.18.5"
        },
        "pandas": {
            "hashes": [
                "sha256:034185bb615dc96d08fa13aacba8862949db19d5e7804d6ee242d086f07bcc46",
                "sha256:0c9b7f1933e3226cc16129cf2093338d63ace5c85db7c9588e3e1ac5c1937ad5",
                "sha256:1f6fcf0404626ca0475715da045a878c7062ed39bc859afc4ccf0ba0a586a0aa",
                "sha256:1fc963ba33c299973e92d45466e576d11f28611f3549469aec4a35658ef9f4cc",
                "sha256:29b4cfee5df2bc885607b8f016e901e63df7ffc8f00209000471778f46cc6678",
                "sha256:2a8b6c28607e3f3c344fe3e9b3cd76d2bf9f59bc8c0f2e582e3728b80e1786dc",
                "sha256:2bc2ff52091a6ac481cc75d514f06227dc1b10887df1eb72d535475e7b825e31",
                "sha256:415e4d52fcfd68c3d8f1851cef4d947399232741cc994c8f6aa5e6a9f2e4b1d8",
                "sha256:519678882fd0587410ece91e3ff7f73ad6ded60f6fcb8aa7bcc85c1dc20ecac6",
                "sha256:51e0abe6e9f5096d246232b461649b0aa627f46de8f6344597ca908f2240cbaa",
                "sha256:698e26372dba93f3aeb09cd7da2bb6dd6ade248338cfe423792c07116297f8f4",
                "sha256:83af85c8e539a7876d23b78433d90f6a0e8aa913e37320785cf3888c946ee874",
                "sha256:982cda36d1773076a415ec62766b3c0a21cdbae84525135bdb8f460c489bb5dd",
                "sha256:a647e44ba1b3344ebc5991c8aafeb7cca2b930010923657a273b41d86ae225c4",
                "sha256:b35d625282baa7b51e82e52622c300a1ca9f786711b2af7cbe64f1e6831f4126",
                "sha256:bab51855f8b318ef39c2af2c11095f45a10b74cbab4e3c8199efcc5af314c648"
            ],
            "index": "pypi",
            "version": "==1.0.4"
        },
        "pyarrow": {
            "hashes": [
                "sha256:18f65739d1d8ed8ad0d88228fd9ab76558a9c808c01dca2f24be2c72b875f43b",
                "sha256:21b4d31a2813e81ed6664c37decb548618fd93838f983c3d634e3eae1d91a597",
                "sha256:278d11800c2e0f9bea6314ef718b2368b4046ba24b6c631c14edad5a1d351e49",
                "sha256:2af53a80076ab802cbfcd97063645b45d81d1e5ca206c7edcf122fa4d36026d9",
                "sha256:3562ac22b0647c212aa9c0b21a2caeeb21d02aa7ba2cb696a355893f50bc18b0",
                "sha256:375641f817382c5562c204f7d355f134400de0a778642e419d69fe4d55d38917",
                "sha256:38d1ef84c66123dc9eb8514f32fa866652df204c9ce1e5930461ea8f2ba9bffb",
                "sha256:59b200dd3344413f7f68a5745a30964b690c41c23d5e95475be865fd264550ff",
                "sha256:5a0f5279bee86310f8c02706e1c706ccc30d030b1febd844f2a269f3fc7cafae",
                "sha256:837a22f34b9c941ca7bdb6ff7ca7dd9381d590ea60de64c3829cdd2b90fafebb",
                "sha256:841b3780aee3cb307fecdfaaae94ca5f3e49b28634335da63d0e383053187149",
                "sha256:9508a0514b94068a9811608c2362393fb2de8308f4152fbc8572fa275759fbf7",
                "sha256:99b0fc309660fe1ff122d14c6b42f79f8e6cc5324223f85f1190c108e40c6e4a",
                "sha256:a1e19a532d4d8a46c2484d914670034f7ea3ef4884c1cd9600ecb1ac8aecd28d",
                "sha256:b142cc9b42e9b87a2f0624b2bd176a84ec7f47d170de1c46eeb155eab1d08dbd",
                "sha256:b46c693dd766fc7cab41a803653e80930ec1b71ac51c7f42b5d62b7cae1c2efa",
                "sha256:cc3fb951347993ad9d5aa38c3aabd9be8341994b35c2fcc307f507a298187196",
                "sha256:d6b352da205d58aa1a5705075a5e547ff7fb610b182e38d211a17dccad88d72d",
                "sha256:e6f736df6c88836ce3eeb0fee1de939af56981f82aa9b3bdef2ab6f3201de05e",
                "sha256:ea2dd2b55edd9b893e9b6ac2dc8a84fd66598636b933aece04768960a9dd1667",
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}
@matthewfranglen
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This error occurs with versions 2020.6.2 and 2020.5.28 but not with 2018.11.26

@frostming
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What is the output of which pip or which pip3?

@frostming frostming added Status: Awaiting Update ⏳ This issue requires more information before assistance can be provided. Status: Needs More Information This issue does not provide enough information to take further action. labels Jun 15, 2020
@matthewfranglen
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pip does not resolve:

which: no pip in (/sbin:/bin:/usr/sbin:/usr/bin)

pip3 does:

/bin/pip3

This is a minimal amazon ami image so it's likely that the python package is present (which installs python2) but python-pip is not. I explicitly install python3-pip because of this split.

@jshin49
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jshin49 commented Jun 18, 2020

Have the same issue here, and the issue is same as
#4337 and #4220
Apparently, the only working fix is to revert to 2018.11.26 so far, but isn't that just too far?

@cemsbr
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cemsbr commented Jun 22, 2020

With the python:3.8 docker hub image, pipenv 2020.6.2, and pipenv install --system --ignore-pipfile, I get:

Installing dependencies from Pipfile.lock (8af379)…
Failed to load paths: /bin/sh: 1: /root/.local/share/virtualenvs/app-4PlAip0Q/bin/python: not found

Output: 
Failed to load paths: /bin/sh: 1: /root/.local/share/virtualenvs/app-4PlAip0Q/bin/python: not found

Output: 
Failed to load paths: /bin/sh: 1: /root/.local/share/virtualenvs/app-4PlAip0Q/bin/python: not found

@jiashucheniress
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jiashucheniress commented Jun 23, 2020 •
edited
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the issue is fixed on master by pr #4319 , however, the fix hasn't been released yet. atm the way I'm by passing it is by doing the following

python -m pip install git+https://github.com/pypa/pipenv@97324a6932b3fda0ccbabcc349474d74a913e0bc

This takes the master commit with the fix, but not all of the subsequent changes

@soulwawa
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Release v2020.8.13 Awesome !!
solve the issue to me.

@frostming
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Thank you all for testing!

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@cemsbr @matthewfranglen @jshin49 @soulwawa @frostming @jiashucheniress