Rename sph_harm to sph_harm_y

.ci_support/environment-old.yml

@@ -11,7 +11,7 @@ dependencies:
 - pymatgen =2022.2.1
 - pyscal3 =3.2.5
 - scikit-learn =1.2.1
-- scipy =1.9.3
+- scipy =1.15.0
 - spglib =1.16.5
 - sqsgenerator =0.2
 - hatchling =1.27.0

structuretoolkit/analyse/neighbors.py

@@ -9,7 +9,7 @@
 from scipy.sparse import coo_matrix
 from scipy.spatial import cKDTree
 from scipy.spatial.transform import Rotation
-from scipy.special import gamma, sph_harm
+from scipy.special import gamma, sph_harm_y
 
 from structuretoolkit.common.helper import (
     get_average_of_unique_labels,
@@ -667,7 +667,7 @@ def get_spherical_harmonics(
         The angles are calculated based on `self.vecs`, where the azimuthal angle is defined on the
         xy-plane and the polar angle is along the z-axis.
 
-        See more on: scipy.special.sph_harm
+        See more on: scipy.special.sph_harm_y
 
         """
         vecs = self.filled.vecs
@@ -684,7 +684,7 @@ def get_spherical_harmonics(
         phi[within_cutoff] = np.arctan2(
             np.linalg.norm(vecs[within_cutoff, :2], axis=-1), vecs[within_cutoff, 2]
         )
-        return np.sum(sph_harm(m, l, theta, phi) * within_cutoff, axis=-1) / np.sum(
+        return np.sum(sph_harm_y(l, m, phi, theta) * within_cutoff, axis=-1) / np.sum(
             within_cutoff, axis=-1
         )