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@pm-blanco pm-blanco commented Mar 11, 2025

Partially solves #58

Changed

  • lib.handy_functions.setup_langevin_dynamics now takes seed as input argument instead than SEED for coherence with the rest of the library.

Added

  • CI testing for functions in lib.handy_functions
  • sanity tests for lib.handy_functions
  • Use of logging in lib.handy_functions to handle output and error logs. (Starts working on Improve exception handling #115 )
  • new function to relax the espreso_system lib.handy_functions.relax_espresso_system

Fixed

  • docs in lib.handy_functions

Removed

  • lib.handy_functions.minimize_espresso_system_energy because its name was confusing (it was not only minimizing the system energy) and was changing the parameters of the integrator under the hood.
  • print statements and most of verbose

@pm-blanco pm-blanco added this to the pyMBE 1.0.0 milestone Mar 11, 2025
@pm-blanco pm-blanco merged commit 4a22fa7 into pyMBE-dev:main Mar 11, 2025
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1234somesh pushed a commit to 1234somesh/pyMBE that referenced this pull request May 21, 2025
* add unit testing for setup_langevin_dynamics, improve docs

* add full ci testing to handy_functions

* fix indentation

* update CHANGELOG

* change the level of state logs to debug
@pm-blanco pm-blanco deleted the handy_functions_setup branch August 12, 2025 13:24
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2 participants