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update tb & zika tutorials to use export v2
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emmahodcroft committed Apr 7, 2020
1 parent 9a8f6ca commit e453ded
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5 changes: 2 additions & 3 deletions static-site/content/docs/03-tutorials/01-zika.md
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Expand Up @@ -213,7 +213,7 @@ This refers to three config files to define colors via `config/colors.tsv`, lati
The resulting tree and metadata JSON files are the inputs to the Auspice visualization tool.

```
augur export \
augur export v2 \
--tree results/tree.nwk \
--metadata data/metadata.tsv \
--node-data results/branch_lengths.json \
Expand All @@ -223,8 +223,7 @@ augur export \
--colors config/colors.tsv \
--lat-longs config/lat_longs.tsv \
--auspice-config config/auspice_config.json \
--output-tree auspice/zika_tree.json \
--output-meta auspice/zika_meta.json
--output auspice/zika.json
```

## Visualize the Results
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5 changes: 2 additions & 3 deletions static-site/content/docs/03-tutorials/02-tb.md
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Expand Up @@ -298,7 +298,7 @@ Finally, collect all node annotations and metadata and export it all in Auspice
The resulting tree and metadata JSON files are the inputs to the Auspice visualization tool.

```
augur export \
augur export v2 \
--tree results/tree.nwk \
--metadata data/meta.tsv \
--node-data results/branch_lengths.json \
Expand All @@ -310,8 +310,7 @@ augur export \
--auspice-config config/config.json \
--colors config/color.tsv \
--lat-longs config/lat_longs.tsv \
--output-tree auspice/tb_tree.json \
--output-meta auspice/tb_meta.json
--output auspice/tb.json
```

---
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