deprecation prep#1399

Draft

jamesmkrieger wants to merge 9 commits intoprody:mainfrom

jamesmkrieger:deprec

Commits on Aug 1, 2021

Commits on Aug 5, 2021

bug fix on tobytes deprec
jamesmkrieger
committed

Commits on Oct 25, 2021

Commits on Dec 20, 2021

Merge branch 'master' of github.com:prody/ProDy into deprec
jamesmkrieger
committed

Commits on Jan 31, 2023

merge update
jamesmkrieger
committed

Commits on Sep 19, 2024

Merge branch 'main' of github.com:prody/ProDy into deprec
jamesmkrieger
committed