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Cellpose integration #14

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@pr4deepr

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@pr4deepr

PT-BIOP has a nice Fiji cellpose wrapper that calls cellpose from Fiji: https://github.com/BIOP/ijl-utilities-wrappers
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Points to consider:

  • Instructions to install cellpose;

    • links to python environment config
    • video tutorial?
  • Rescaling of image done in GAT for Stardist prediction. Determine the radius we pass to cellpose?

  • Add test macro to test different options in Cellpose??

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