Error while plotting stats

[suheyla2]

Hi Tashrif,

I received the following error below at the final step of debugging: plotting stats (harm_plot.py).
cvs files were generated successfully.

I think the error might be because my two sites do not have the same number of subjects, but the function assumes that they should have? FYI: In template creation, we expect two sites to not have a significantly different number of subjects to avoid bias but it is not necessary to have the exact same number of subjects in each site.

Thanks,
Suheyla

12/27/20 00:54,mean meanFA b2500
Reference_Dec262020_BU,0.3687987787675452
Target_Dec262020_NYU_before,0.3895502700221303
Target_Dec262020_NYU_after,0.3729605772701804

Traceback (most recent call last):
  File "/data/pnl/soft/pnlpipe3/multi-shell-dMRIharmonization/lib/harmonization.py", line 529, in <module>
    pipeline.run()
  File "/data/pnl/soft/pnlpipe3/miniconda3/envs/pnlpipe3/lib/python3.6/site-packages/plumbum/cli/application.py", line 572, in run
    retcode = inst.main(*tailargs)
  File "/data/pnl/soft/pnlpipe3/multi-shell-dMRIharmonization/lib/harmonization.py", line 522, in main
    self.post_debug()
  File "/data/pnl/soft/pnlpipe3/multi-shell-dMRIharmonization/lib/harmonization.py", line 358, in post_debug
    self.showStat()
  File "/data/pnl/soft/pnlpipe3/multi-shell-dMRIharmonization/lib/harmonization.py", line 409, in showStat
    outPrefix=pjoin(self.templatePath,'meanFAstat'), bshell_b=self.bshell_b)
  **File "/data/pnl/soft/pnlpipe3/multi-shell-dMRIharmonization/lib/harm_plot.py", line 27, in harm_plot
    num_series, num_sub= np.shape(ydata)
ValueError: not enough values to unpack (expected 2, got 1)**

[tashrifbillah]

Hi Suheyla,

FYI: In template creation, we expect two sites to not have a significantly different number of subjects to avoid bias but it is not necessary to have the exact same number of subjects in each site.

News for me but hasn't it always been that we shall need a set of matching reference and target subjects for template creation? For a match to happen, it will always be the same number across two sites.

[suheyla2]

Matching is performed at the group level, not one to one. Suheyla

…

________________________________ From: Tashrif Billah <notifications@github.com> Sent: Monday, January 4, 2021 1:29 PM To: pnlbwh/multi-shell-dMRIharmonization <multi-shell-dMRIharmonization@noreply.github.com> Cc: Cetin Karayumak, Suheyla <SKARAYUMAK@BWH.HARVARD.EDU>; Author <author@noreply.github.com> Subject: Re: [pnlbwh/multi-shell-dMRIharmonization] Error while plotting stats (#23) External Email - Use Caution Hi Suheyla, FYI: In template creation, we expect two sites to not have a significantly different number of subjects to avoid bias but it is not necessary to have the exact same number of subjects in each site. News for me but hasn't it always been that we shall need a set of matching reference and target subjects for template creation? For a match to happen, it will always be the same number across two sites. — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub<https://secure-web.cisco.com/1pC3_zfU1pqMI6ofq8NJwBWiXhtsnz1xqMSq5HS5IfX7ukrB5-LTHbWgKpe16EyJ-UAVuaWLVGqFUpmsWDplzGzee1TbBoxAWBzq8Cjm9QFRaTOo-5r7opo00hzi3qgb1yJnEgSB0ufNRNNu3h7yDPv--UONVGDITAVVAC9sisEFV3jPCAEvY8qOlHfdqiirQdFc037vAM4Yaae_DlCP2Ncpdvp3G0Q-Otg67ATTm9gYw3FHH8ztbaGwO860u7nJhrSBY3nm_g8ZqZKSAD5KudQ/https%3A%2F%2Fgithub.com%2Fpnlbwh%2Fmulti-shell-dMRIharmonization%2Fissues%2F23%23issuecomment-754139086>, or unsubscribe<https://secure-web.cisco.com/16-F0o2rXlbGWYohhXbaQLcbCgqjpuSEr88TpB5srj0oKy5JSG_NaVFcXfh75D8stQUy656LyLropUxbbl2gGmPVvaEB9HmvQ6hnhi6ZejGzL3G0RMzidvawa_1x03HSTWZXho88F22WUyAV0BTIjCpFqhbLbIj594JUhlTXWP7hY8BfZlLYVl1BrZE9idepft8FOMJoX1mpdUhQUVcx68aJKqy0VzAyuDO2yC9csOWhdWdWf3_SJy3N-IoTnEnqdmRn8TqWJcVbw2PQhnz1qKQ/https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FAGLM7TB55HPZK5NMSJQLICLSYICITANCNFSM4VRPT7VA>. The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at http://www.massgeneralbrigham.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.