Four iPython notebooks that characterize strains from multiple disparate data types (metabolomics and proteomics)
Linked to paper "Characterizing Strain Variation in Engineered E. coli Using a Multi-omics Based Workflow"
by Elizabeth Brunk[a,b,g,†], Kevin W. George[a,d,†], Jorge Alonso-Gutierrez[a,g], Mitchell Thompson[a,e], Edward Baidoo[a], George Wang[a], Christopher J. Petzold[a,g] Douglas McCloskey[b], Jonathan Monk[b], Laurence Yang[b], Edward J. O’Brien[b], Tanveer S. Batth[a], Héctor García Martín[a,g], Adam Feist[b,c], Paul D. Adams[a,g], Jay D. Keasling[a,c,f,g,h], Bernhard O. Palsson*[b,c], Taek Soon Lee*[a,g]
- correspondence should be addressed to: T.S.L (tslee@lbl.gov) and B.O.P (palsson@eng.ucsd.edu) -a Joint Bioenergy Institute (JBEI), 5885 Hollis Street, Emeryville, CA 94618 -b Department of Bioengineering, University of California San Diego CA 92093 -c The Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Horsholm Denmark -d Current location: Amyris, 5885 Hollis Street, Emeryville CA 94618 -e Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720 -f Department of Chemical & Biomolecular Engineering, University of California, Berkeley, CA 94720 -g Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 -h Department of Bioengineering, University of California, Berkeley, CA 94720 -† Authors contributed equally