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Adapt to new format metadata gtdb #22

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Adapt to new format metadata gtdb #22

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f10f683
Adapt to new format metadata gtdb
pirovc Sep 6, 2024
44d29fa
Bump version 1.3.2
pirovc Sep 6, 2024
621eee1
Removed encoded parse gtdb metadata
pirovc Sep 6, 2024
5be8900
revert Removed encoded parse gtdb metadata
pirovc Sep 6, 2024
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Removed encoded parse gtdb metadata
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@pirovc
pirovc committed Sep 6, 2024
commit 621eee1beacd14c56a046f9c4509b97336610a7d
5 changes: 1 addition & 4 deletions multitax/gtdbtx.py
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Expand Up @@ -42,10 +42,7 @@ def _build_translation(self, target_tax, files: list = None, urls: list = None):

for source, fh in fhs.items():
for line in fh:
try:
fields = line.rstrip().split('\t')
except:
fields = line.decode().rstrip().split('\t')
fields = line.rstrip().split('\t')

# skip header
if fields[accession_col] == "accession":
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