v1.0: July 15, 2025
- Initial Version of Cosmos
Cosmos is a Python package for multi-phenotype deep mutational scanning analysis. Specifically, it is suitable for two sequential protein functional phenotypes, one upstream and one downstream - for example, abundance and activity.
pip install cosmos-dms
Source code can be found on the GitHub repo pimentellab/cosmos
Cosmos uses Poetry for environment and dependency management.
To install Cosmos, follow these steps:
- Install Poetry (if not already installed). Please follow the guideline on Poetry's official documentation.
- Clone the repository.
git clone https://github.com/pimentellab/cosmos.git
cd cosmos
- Install and activate the environment.
poetry lock
poetry install
Check out the vignette/ directory in the source code.