update version and changelog

CHANGELOG.md

@@ -3,6 +3,23 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## v1.1.0 - [Unreleased]
+
+### `Added`
+- Input schema JSON and validation
+- FORMAT_INPUT workflow
+    - Handles the input data now
+- `nf-schema@2.0.0` plugin
+
+### `Changed`
+- `--input SAMPLESHEET_CSV` header
+    - Went from `reads` with path to barcode directories to `fastq_1` with path to fastq files
+- Fixed bug so that SNPEff will now work with given gff files
+    - Issue was typo related in the build module
+- Fixed bug with `calc_bam_variation` caused by genome case
+- Log and error statements
+- Fixed the cache directory statements
+
 ## v1.0.0 - [2024-03-22]
 
 Initial release of `phac-nml/viralassembly`, created from combining the [nf-core](https://nf-co.re/) template with the artic steps.

nextflow.config

@@ -246,7 +246,7 @@ manifest {
     description     = """Assemble and QC viral reads"""
     mainScript      = 'main.nf'
     nextflowVersion = '!>=23.04.0'
-    version         = '1.0.0'
+    version         = '1.1.0'
     doi             = ''
     defaultBranch   = 'main'
 }