Skip to content

Introduce Myers algorithm in linear space #112

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
merged 14 commits into from
Jun 11, 2024
Merged
Show file tree
Hide file tree
Changes from 1 commit
Commits
File filter

Filter by extension

Filter by extension


Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
Prev Previous commit
Next Next commit
feat: introduce MyersDiffWithLinearSpace
  • Loading branch information
lppedd authored and Edoardo Luppi committed May 19, 2024
commit df9a0597ebd3769f9049849ab975e6dbce7b4c27
17 changes: 15 additions & 2 deletions build.gradle.kts
Original file line number Diff line number Diff line change
Expand Up @@ -7,6 +7,7 @@ import org.jetbrains.kotlin.gradle.ExperimentalKotlinGradlePluginApi
import org.jetbrains.kotlin.gradle.dsl.JvmTarget
import org.jetbrains.kotlin.gradle.dsl.KotlinVersion
import org.jetbrains.kotlin.gradle.targets.js.dsl.ExperimentalWasmDsl
import org.jetbrains.kotlin.gradle.targets.js.testing.KotlinJsTest

plugins {
kotlin("multiplatform")
Expand Down Expand Up @@ -48,8 +49,20 @@ kotlin {
}

js {
browser()
nodejs()
val testConfig: (KotlinJsTest).() -> Unit = {
useMocha {
// Override default 2s timeout
timeout = "120s"
}
}

browser {
testTask(testConfig)
}

nodejs {
testTask(testConfig)
}
}

@OptIn(ExperimentalWasmDsl::class)
Expand Down
1,362 changes: 8 additions & 1,354 deletions kotlin-js-store/yarn.lock

Large diffs are not rendered by default.

Original file line number Diff line number Diff line change
@@ -0,0 +1,219 @@
/*
* Copyright 2024 Peter Trifanov.
* Copyright 2009-2021 java-diff-utils.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*
* This file has been modified by Peter Trifanov when porting from Java to Kotlin.
*/
package io.github.petertrr.diffutils.algorithm.myers

import io.github.petertrr.diffutils.algorithm.Change
import io.github.petertrr.diffutils.algorithm.DiffAlgorithm
import io.github.petertrr.diffutils.algorithm.DiffAlgorithmListener
import io.github.petertrr.diffutils.algorithm.DiffEqualizer
import io.github.petertrr.diffutils.algorithm.EqualsDiffEqualizer
import io.github.petertrr.diffutils.patch.DeltaType

public class MyersDiffWithLinearSpace<T>(
private val equalizer: DiffEqualizer<T> = EqualsDiffEqualizer(),
) : DiffAlgorithm<T> {
public override fun computeDiff(source: List<T>, target: List<T>, progress: DiffAlgorithmListener): List<Change> {
progress.diffStart()

val data = DiffData(source, target)
val maxIdx = source.size + target.size
val progressWrapper = DelegateAlgorithmListener(maxIdx, progress)
buildScript(data, 0, source.size, 0, target.size, progressWrapper)

progress.diffEnd()
return data.script
}

private fun buildScript(
data: DiffData<T>,
start1: Int,
end1: Int,
start2: Int,
end2: Int,
progress: DiffAlgorithmListener,
) {
progress.diffStep((end1 - start1) / 2 + (end2 - start2) / 2, -1)

val middle = getMiddleSnake(data, start1, end1, start2, end2)

if (middle == null ||
middle.start == end1 && middle.diag == end1 - end2 ||
middle.end == start1 && middle.diag == start1 - start2
) {
var i = start1
var j = start2

while (i < end1 || j < end2) {
if (i < end1 && j < end2 && equalizer.test(data.source[i], data.target[j])) {
// script.append(new KeepCommand<>(left.charAt(i)));
Copy link
Owner

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

What's the plan for the commented code?

Copy link
Contributor Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

@petertrr I'll get rid of them!

++i
++j
} else {
// TODO: compress these commands
if (end1 - start1 > end2 - start2) {
// script.append(new DeleteCommand<>(left.charAt(i)));
if (data.script.isEmpty() ||
data.script[data.script.size - 1].endOriginal != i ||
data.script[data.script.size - 1].deltaType != DeltaType.DELETE
) {
data.script.add(Change(DeltaType.DELETE, i, i + 1, j, j))
} else {
data.script[data.script.size - 1] =
data.script[data.script.size - 1].copy(endOriginal = i + 1)
}

++i
} else {
if (data.script.isEmpty() ||
data.script[data.script.size - 1].endRevised != j ||
data.script[data.script.size - 1].deltaType != DeltaType.INSERT
) {
data.script.add(Change(DeltaType.INSERT, i, i, j, j + 1))
} else {
data.script[data.script.size - 1] =
data.script[data.script.size - 1].copy(endRevised = j + 1)
}

++j
}
}
}
} else {
buildScript(data, start1, middle.start, start2, middle.start - middle.diag, progress)
buildScript(data, middle.end, end1, middle.end - middle.diag, end2, progress)
}
}

private fun getMiddleSnake(data: DiffData<T>, start1: Int, end1: Int, start2: Int, end2: Int): Snake? {
val m = end1 - start1
val n = end2 - start2

if (m == 0 || n == 0) {
return null
}

val delta = m - n
val sum = n + m
val offset = (if (sum % 2 == 0) sum else sum + 1) / 2
data.vDown[1 + offset] = start1
data.vUp[1 + offset] = end1 + 1

for (d in 0..offset) {
// Down
var k = -d

while (k <= d) {
// First step
val i = k + offset

if (k == -d || k != d && data.vDown[i - 1] < data.vDown[i + 1]) {
data.vDown[i] = data.vDown[i + 1]
} else {
data.vDown[i] = data.vDown[i - 1] + 1
}

var x = data.vDown[i]
var y = x - start1 + start2 - k

while (x < end1 && y < end2 && equalizer.test(data.source[x], data.target[y])) {
data.vDown[i] = ++x
++y
}

// Second step
if (delta % 2 != 0 && delta - d <= k && k <= delta + d) {
if (data.vUp[i - delta] <= data.vDown[i]) {
return buildSnake(data, data.vUp[i - delta], k + start1 - start2, end1, end2)
}
}

k += 2
}

// Up
k = delta - d

while (k <= delta + d) {
// First step
val i = k + offset - delta

if (k == delta - d || k != delta + d && data.vUp[i + 1] <= data.vUp[i - 1]) {
data.vUp[i] = data.vUp[i + 1] - 1
} else {
data.vUp[i] = data.vUp[i - 1]
}

var x = data.vUp[i] - 1
var y = x - start1 + start2 - k

while (x >= start1 && y >= start2 && equalizer.test(data.source[x], data.target[y])) {
data.vUp[i] = x--
y--
}

// Second step
if (delta % 2 == 0 && -d <= k && k <= d) {
if (data.vUp[i] <= data.vDown[i + delta]) {
return buildSnake(data, data.vUp[i], k + start1 - start2, end1, end2)
}
}

k += 2
}
}

// According to Myers, this cannot happen
error("Could not find a diff path")
}

private fun buildSnake(data: DiffData<T>, start: Int, diag: Int, end1: Int, end2: Int): Snake {
var end = start

while (end - diag < end2 && end < end1 && equalizer.test(data.source[end], data.target[end - diag])) {
++end
}

return Snake(start, end, diag)
}

private class DelegateAlgorithmListener(
val maxIdx: Int,
val delegate: DiffAlgorithmListener,
) : DiffAlgorithmListener by delegate {
override fun diffStep(value: Int, max: Int) {
delegate.diffStep(value, maxIdx)
}
}

private class DiffData<T>(
val source: List<T>,
val target: List<T>,
) {
val size = source.size + target.size + 2
val vDown = IntArray(size)
val vUp = IntArray(size)
val script = ArrayList<Change>()
}

private class Snake(
val start: Int,
val end: Int,
val diag: Int,
)
}
Original file line number Diff line number Diff line change
Expand Up @@ -20,54 +20,62 @@ package io.github.petertrr.diffutils.algorithm.myers

import io.github.petertrr.diffutils.algorithm.DiffAlgorithmListener
import io.github.petertrr.diffutils.patch.Patch
import io.github.petertrr.diffutils.utils.deleteDeltaOf
import io.github.petertrr.diffutils.utils.insertDeltaOf
import kotlin.test.Test
import kotlin.test.assertEquals
import kotlin.test.assertNotNull

class MyersDiffTest {
@Test
fun testDiffMyersExample1Forward() {
val original: List<String> = listOf("A", "B", "C", "A", "B", "B", "A")
val revised: List<String> = listOf("C", "B", "A", "B", "A", "C")
val patch: Patch<String> = Patch.generate(original, revised, MyersDiff<String>().computeDiff(original, revised))
assertNotNull(patch)
val original = listOf("A", "B", "C", "A", "B", "B", "A")
val revised = listOf("C", "B", "A", "B", "A", "C")
val patch = Patch.generate(original, revised, MyersDiff<String>().computeDiff(original, revised))

assertEquals(4, patch.deltas.size)
assertEquals(
"Patch{deltas=[${deleteDeltaOf(0, listOf("A", "B"))}, ${insertDeltaOf(3, 1, listOf("B"))}, ${deleteDeltaOf(5, listOf("B"), 4)}, ${insertDeltaOf(7, 5, listOf("C"))}]}",
patch.toString()
"Patch{deltas=[" +
"[DeleteDelta, position: 0, lines: [A, B]], " +
"[InsertDelta, position: 3, lines: [B]], " +
"[DeleteDelta, position: 5, lines: [B]], " +
"[InsertDelta, position: 7, lines: [C]]" +
"]}",
patch.toString(),
)
}

@Test
fun testDiffMyersExample1ForwardWithListener() {
val original: List<String> = listOf("A", "B", "C", "A", "B", "B", "A")
val revised: List<String> = listOf("C", "B", "A", "B", "A", "C")
val logdata: MutableList<String> = ArrayList()
val patch: Patch<String> = Patch.generate(original, revised,
val original = listOf("A", "B", "C", "A", "B", "B", "A")
val revised = listOf("C", "B", "A", "B", "A", "C")
val logData = ArrayList<String>()
val patch = Patch.generate(
original, revised,
MyersDiff<String>().computeDiff(original, revised, object : DiffAlgorithmListener {
override fun diffStart() {
logdata.add("start")
logData.add("start")
}

override fun diffStep(value: Int, max: Int) {
logdata.add("$value - $max")
logData.add("$value - $max")
}

override fun diffEnd() {
logdata.add("end")
logData.add("end")
}
})
)
assertNotNull(patch)

assertEquals(4, patch.deltas.size)
assertEquals(
"Patch{deltas=[${deleteDeltaOf(0, listOf("A", "B"))}, ${insertDeltaOf(3, 1, listOf("B"))}, " +
"${deleteDeltaOf(5, listOf("B"), 4)}, ${insertDeltaOf(7, 5, listOf("C"))}]}",
patch.toString()
"Patch{deltas=[" +
"[DeleteDelta, position: 0, lines: [A, B]], " +
"[InsertDelta, position: 3, lines: [B]], " +
"[DeleteDelta, position: 5, lines: [B]], " +
"[InsertDelta, position: 7, lines: [C]]" +
"]}",
patch.toString(),
)
println(logdata)
assertEquals(8, logdata.size)

println(logData)
assertEquals(8, logData.size)
}
}
Loading