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Revert to native plot embedding #4

Merged
merged 13 commits into from
Mar 28, 2023
Merged

Revert to native plot embedding #4

merged 13 commits into from
Mar 28, 2023

Commits on Mar 28, 2023

  1. remove Shiny version of plotEmbedding 

    fix mainEmbeds and matrixEmbeds to use the original version of plotEmbedding. Remove all shiny-centric updates to plotEmbedding
    @rcorces
    rcorces committed Mar 28, 2023
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  2. bugfix

    @rcorces
    rcorces committed Mar 28, 2023
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  3. bugfix 

    make groups apply to both frags and cov
    @rcorces
    rcorces committed Mar 28, 2023
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  4. add threads argument to exportClusterCoverage

    @rcorces
    rcorces committed Mar 28, 2023
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  5. bugfix addSeqLengths is hidden 

    correct function name
    @rcorces
    rcorces committed Mar 28, 2023
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  6. bugfix old arguments

    @rcorces
    rcorces committed Mar 28, 2023
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  7. add back feature name storage

    @rcorces
    rcorces committed Mar 28, 2023
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  8. remove explicit namespace loading from global 

    is this needed? seems like it should not be needed
    @rcorces
    rcorces committed Mar 28, 2023
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  9. bugfix dir name

    @rcorces
    rcorces committed Mar 28, 2023
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  10. typo

    @rcorces
    rcorces committed Mar 28, 2023
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  11. add status reporting for feature plots

    @rcorces
    rcorces committed Mar 28, 2023
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  12. pass logFile to plotEmbedding

    @rcorces
    rcorces committed Mar 28, 2023
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  13. Merge branch 'dev' into dev_mrcPlotEmbedding

    @rcorces
    rcorces authored Mar 28, 2023
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