Skip to content

Commit

Permalink
add references to fermentation dataset
Browse files Browse the repository at this point in the history
  • Loading branch information
paucablop committed Sep 22, 2023
1 parent c8c015a commit 34065aa
Show file tree
Hide file tree
Showing 2 changed files with 11 additions and 1 deletion.
12 changes: 11 additions & 1 deletion get-started/datasets.md
Original file line number Diff line number Diff line change
Expand Up @@ -14,7 +14,17 @@ The ```chemotools``` package includes a number of datasets that can be used to t


## The Fermentation Dataset
The Fermentation Dataset contains spectra collected during a fermentation process. The spectra are collected using attenuated total reflectance Fourier transform infrared spectroscopy (ATR-FTIR). The Fermentation Dataset consists of two sets of spectra:
The Fermentation Dataset contains spectra collected during a fermentation process. The spectra are collected using attenuated total reflectance Fourier transform infrared spectroscopy (ATR-FTIR). The Fermentation Dataset consists of two sets of spectra, a training set and a test set. A representation of the fermentation setup is shown in the figure below.

![Fermentation setup](./figures/fermentation_setup.png)

More information about the Fermentation Dataset can be found in the following publications:

- Cabaneros Lopez, P., Abeykoon Udugama, I., Thomsen, S.T. et al. __Transforming data to information: A parallel hybrid model for real-time state estimation in lignocellulosic ethanol fermentation.__ 2, 118 (2021). Biotechnology and Bioengineering https://doi.org/10.1002/bit.27586.

- Cabaneros Lopez, P., Abeykoon Udugama, I., Thomsen, S.T. et al. __Towards a digital twin: a hybrid data-driven and mechanistic digital shadow to forecast the evolution of lignocellulosic fermentation.__ Biofuels, Bioproducs and Biorefining 5, 14 (2020). https://doi.org/10.1002/bbb.2108.

- Cabaneros Lopez, P., Abeykoon Udugama, I., Thomsen, S.T. et al. __Promoting the co-utilisation of glucose and xylose in lignocellulosic ethanol fermentations using a data-driven feed-back controller.__ Biotechnol Biofuels 13, 190 (2020). https://doi.org/10.1186/s13068-020-01829-2

##### __THE TRAIN SET__
The train set consists of 21 synthetic spectra and their reference glucose concentrations measured by high-performance liquid chromatography (HPLC).
Expand Down
Binary file added get-started/figures/fermentation_setup.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.

0 comments on commit 34065aa

Please sign in to comment.