housekeeping

driver/batch/mox1_batch_BLANK.sh

@@ -16,7 +16,7 @@
 #SBATCH --mem=128G
 
 ## Exclude nodes for debugging 2022.03.17
-#SBATCH --exclude=n2231,n2399
+## #SBATCH --exclude=n2231,n2399
 
 module load icc_17-impi_2017
 module load netcdf_fortran+c_4.4.1.1-icc_17

misc/klone.bashrc_2022.03.22

@@ -0,0 +1,38 @@
+# .bashrc
+
+# Source global definitions
+if [ -f /etc/bashrc ]; then
+	. /etc/bashrc
+fi
+
+# User specific environment
+if ! [[ "$PATH" =~ "$HOME/.local/bin:$HOME/bin:" ]]
+then
+    PATH="$HOME/.local/bin:$HOME/bin:$PATH"
+fi
+export PATH
+
+module load intel/oneAPI
+LODIR=/gscratch/macc/local
+#OMPI=${LODIR}/openmpi-ifort
+NFDIR=${LODIR}/netcdf-ifort
+NCDIR=${LODIR}//netcdf-icc
+export LD_LIBRARY_PATH=${NFDIR}/lib:${NCDIR}/lib:${LD_LIBRARY_PATH}
+export PATH=/gscratch/macc/local/netcdf-ifort/bin:$PATH
+export PATH=/gscratch/macc/local/netcdf-icc/bin:$PATH
+#export PATH=/gscratch/macc/local/openmpi-ifort/bin:$PATH
+
+
+# Uncomment the following line if you don't like systemctl's auto-paging feature:
+# export SYSTEMD_PAGER=
+
+# User specific aliases and functions
+alias cdpm='cd /gscratch/macc/parker'
+alias cdLo='cd /gscratch/macc/parker/LO'
+alias cdLu='cd /gscratch/macc/parker/LO_user'
+alias cdLoo='cd /gscratch/macc/parker/LO_output'
+alias cdLor='cd /gscratch/macc/parker/LO_roms'
+alias cdLru='cd /gscratch/macc/parker/LO_roms_user'
+alias cdLrs='cd /gscratch/macc/parker/LO_roms_source'
+alias cdLod='cd /gscratch/macc/parker/LO_data'
+alias pmsrun='srun -p compute -A macc --pty bash -l'

misc/mox.bashrc_2022.03.22

@@ -0,0 +1,39 @@
+#  Basic bash startup
+. /usr/local/lib/std.v2.bashrc
+
+case $- in
+*i*)
+
+   # Put interactive-only Bourne shell compatible login startup here.
+
+   # Uncomment one or more of the following for paranoid behavior
+
+   #set -o noclobber
+   #alias cp='cp -i'
+   #alias mv='mv -i'
+   #alias rm='rm -i'
+
+   # Uncomment the following if you want traditional behavior
+
+   #unalias vi
+   #unalias ls
+
+esac
+
+# Commands to facilitate compiling ROMS 2017.12.19
+module load icc_17-impi_2017
+module load netcdf_fortran+c_4.4.1.1-icc_17
+export I_MPI_F90=ifort
+
+# added by Anaconda3 installer
+# export PATH="/gscratch/macc/anaconda3/bin:$PATH"
+
+# Aliases
+alias cdpm='cd /gscratch/macc/parker'
+alias cdlo='cd /gscratch/macc/parker/LiveOcean'
+alias cdLo='cd /gscratch/macc/parker/LO'
+alias cdLu='cd /gscratch/macc/parker/LO_user'
+alias cdLor='cd /gscratch/macc/parker/LO_roms'
+alias cdloo='cd /gscratch/macc/parker/LiveOcean_output'
+alias cdlod='cd /gscratch/macc/parker/LiveOcean_data'
+alias cdlor='cd /gscratch/macc/parker/LiveOcean_roms'