At the time of writing with some very brief tests with the plain text encoder, it appears that the google auth app doesn't like qr codes that lack a username.
$output->writeln('FIDOU2F QR Code:');
ob_start();
(
new GoogleAuth(
$two_factor_auth_secret,
TOTP::ObtainInstance(time(), 30)
)
)->makeQRCode(
new Writer(new PlainTextRenderer()),
'php://output'
);
$output->write(ob_get_clean());
p.s. going to make some qrcode-related changes shortly.