update spoa · pangenome/smoothxg@4b27ce4

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update spoa

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AndreaGuarracino committed Jan 11, 2024

1 parent 25c19ea commit 4b27ce4

deps/spoa

Submodule spoa updated 27 files

+29 −14		.github/workflows/spoa.yml
+3 −0		.gitignore
+18 −20		CMakeLists.txt
+53 −47		README.md
+18 −0		include/meson.build
+6 −0		include/spoa/graph.hpp
+1 −0		include/spoa/spoa.hpp
+14 −0		include/spoa/version.hpp
+111 −0		meson.build
+56 −0		meson_options.txt
+0 −0		src/architectures.hpp
+33 −0		src/graph.cpp
+9 −2		src/main.cpp
+68 −0		src/meson.build
+1 −1		src/simd_alignment_engine.hpp
+75 −4		src/simd_alignment_engine_dispatcher.cpp
+50 −120		src/simd_alignment_engine_implementation.hpp
+12 −0		src/spoa_config.h.in
+13 −0		src/version.cpp
+5 −0		subprojects/bioparser.wrap
+5 −0		subprojects/biosoup.wrap
+15 −0		subprojects/cereal.wrap
+16 −0		subprojects/gtest.wrap
+9 −0		subprojects/simde.wrap
+31 −0		test/meson.build
+24 −29		test/spoa_test.cpp
+14 −0		test/spoa_test_config.h.in

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