intermediate save

pachterlab · Feb 9, 2024 · 470f45a · 470f45a
1 parent 5db1f58
commit 470f45a
Showing 1 changed file with 30 additions and 4 deletions.
diff --git a/seqspec_dev2.ipynb b/seqspec_dev2.ipynb
@@ -197,7 +197,7 @@
       "metadata": {
         "id": "iU4W9CatJslK"
       },
-      "execution_count": 74,
+      "execution_count": 87,
       "outputs": []
     },
     {
@@ -216,20 +216,46 @@
         "    continue\n",
         "\n",
         "  # B: read splits an element (same as case c)\n",
-        "  elif read_stop >= itv_start:\n",
+        "  elif read_stop > itv_start:\n",
         "    new_index[itv_start, min(itv_stop, read_stop)] = e"
       ],
       "metadata": {
         "id": "h1uU4ZkuGbL4"
       },
-      "execution_count": 84,
+      "execution_count": 90,
       "outputs": []
     },
+    {
+      "cell_type": "code",
+      "source": [
+        "new_index"
+      ],
+      "metadata": {
+        "colab": {
+          "base_uri": "https://localhost:8080/"
+        },
+        "id": "2AwnfRrMI6W1",
+        "outputId": "c0860395-8a22-46c2-9c05-5530798823bf"
+      },
+      "execution_count": 91,
+      "outputs": [
+        {
+          "output_type": "execute_result",
+          "data": {
+            "text/plain": [
+              "defaultdict(None, {(0, 16): 'barcode', (16, 27): 'umi', (28, 29): 'umi2'})"
+            ]
+          },
+          "metadata": {},
+          "execution_count": 91
+        }
+      ]
+    },
     {
       "cell_type": "code",
       "source": [],
       "metadata": {
-        "id": "2AwnfRrMI6W1"
+        "id": "WdCd76mKMxus"
       },
       "execution_count": null,
       "outputs": []