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lauraluebbert

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Commits on Jul 13, 2024

• Pass index.k to all plaintext_aux()

  lauraluebbert

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Commits on Sep 17, 2023

• Comment out debugging printout

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  14b0af5

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Commits on Sep 16, 2023

• if aa, automatically set d-list overhang to 3

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Commits on Aug 24, 2023

• Only show dlist overhang warning when dlist is supplied

  lauraluebbert

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Commits on Aug 17, 2023

• Add debugging printouts, dfk_onlist==true with --aa, not checking if dlist kmers are in dbg

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Commits on Aug 15, 2023

• Improve message for d list overhang <3 with --aa

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• Add message when user tried to set overhang <3 with --aa

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Commits on Aug 14, 2023

• Update MinCollector.cpp

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  dc554a5

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• Merge pull request #393 from kreldjarn/d-list-overhang-option

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Commits on Aug 10, 2023

• Comment out conservative dlist read filter

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Commits on Aug 6, 2023

• Add debug printouts (commented out)

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  0da0a7a

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• Discard all frames if one matches to host

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Commits on Aug 5, 2023

• Remove strlen()s

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Commits on Aug 4, 2023

• Set match_partial==False with --aa

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  be596de

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• Remove debugging couts

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  7b57fb0

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• Add debugging print statements

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  1347961

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• debugging?

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  311e06a

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• Translate dlist genome to cfc in all 6 frame with --aa

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Commits on May 26, 2023

• Switch constexpr to ternary operator for compatibility with C++ < 14

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Commits on May 24, 2023

• Change unordered map to function for speed

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Commits on May 7, 2023

• Added d-list masking to --aa

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Commits on Apr 1, 2023

• Updated aa argument descriptions

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  9646b9d

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Commits on Mar 31, 2023

• Fix typo in usageBus()

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  8f5b00f

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Commits on Feb 23, 2023

• bug fix run_info.json with cardinality clashes

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  958f450

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• bug fix run_info.json

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  0cb6b71

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• bug fix

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  4fc3c15

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• bug fix

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  f856826

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• Adding cardinality calsh counter to run_info json

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• Undoing trying to fix batch threading

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• Debugley

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• Debugging by D

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Commits on Feb 22, 2023

• Matching master

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• Delete configure.ac

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  be80930

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• Delaney fixed bug in match

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  88b5f9d

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• Bug in match function

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