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Sequence Bloom Tree with Pod5 Inputs

Project Overview

This project implements a Sequence Bloom Tree (SBT) with a custom rawhash method for processing pod5 sequencing data.

Setup

  1. Create a virtual environment
  2. Install dependencies: pip install -r requirements.txt

Key Components

  • rawhash.py: Custom hash method for pod5 inputs
  • sequence_bloom_tree.py: Core SBT implementation
  • dummy_data/: Directory containing dummy pod5 files for testing