Skip to content

Commit

Permalink
Merge branch 'develop' of github.com:samtools/bcftools into develop
Browse files Browse the repository at this point in the history
  • Loading branch information
pd3 committed Feb 17, 2017
2 parents 49a9eaf + c8e22d3 commit d17235b
Show file tree
Hide file tree
Showing 3 changed files with 0 additions and 24 deletions.
3 changes: 0 additions & 3 deletions test/large_chrom_tbi_limit.20.1.536870912.out

This file was deleted.

20 changes: 0 additions & 20 deletions test/large_chrom_tbi_limit.vcf

This file was deleted.

1 change: 0 additions & 1 deletion test/test.pl
Original file line number Diff line number Diff line change
Expand Up @@ -36,7 +36,6 @@
test_usage($opts,cmd=>'bcftools');
test_tabix($opts,in=>'merge.a',reg=>'2:3199812-3199812',out=>'tabix.2.3199812.out');
test_tabix($opts,in=>'merge.a',reg=>'1:3000151-3000151',out=>'tabix.1.3000151.out');
test_tabix($opts,in=>'large_chrom_tbi_limit',reg=>'chr11:1-536870912',out=>'large_chrom_tbi_limit.20.1.536870912.out'); # 536870912 (1<<29) is the current limit for tbi. cannot retrieve regions larger than that
test_index($opts,in=>'large_chrom_csi_limit',reg=>'chr20:1-2147483647',out=>'large_chrom_csi_limit.20.1.2147483647.out'); # 2147483647 (1<<31-1) is the current chrom limit for csi. bcf conversion and indexing fail above this
test_index($opts,in=>'large_chrom_csi_limit',reg=>'chr20',out=>'large_chrom.20.1.2147483647.out'); # this fails until bug resolved
test_vcf_idxstats($opts,in=>'idx',args=>'-s',out=>'idx.out');
Expand Down

0 comments on commit d17235b

Please sign in to comment.