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Pavlo Hrab authored Dec 23, 2020
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[![DOI](https://zenodo.org/badge/314172997.svg)](https://zenodo.org/badge/latestdoi/314172997)

rRNADif is a method to measure intragenomic 16S rRNA variability within the desired genome sequence against a chosen set of organisms. The app is calculating ML phylogenetic tree and uses mean/median branch length within set of 16S rRNA as a measure of variability between them <br>
By default precomputed database of 21000+ fully sequenced bacterial genomes is available for comparison. However, custom database generation is possible (see [documentation](https://pavlohrab.github.io/rRNADif/))<br>
By default precomputed database of 21000+ fully sequenced bacterial genomes is available for comparison. However, custom database generation is possible (see [documentation](https://ostash-group.github.io/rRNADif/))<br>
If you want to contribute, please feel free to do so !(: <br>
**Documentation and user guides are available in the [website](https://pavlohrab.github.io/rRNADif/)**
**Documentation and user guides are available in the [website](https://ostash-group.github.io/rRNADif/)**
# Analysis Pipeline
![pipeline](images/pipeline.png)
# Citation
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