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| @article{orsini2016daphnia, | ||
| title={Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors}, | ||
| author={Orsini, Luisa and Gilbert, Donald and Podicheti, Ram and Jansen, Mieke and Brown, James B and Solari, Omid Shams and Spanier, Katina I and Colbourne, John K and Rusch, Douglas B and Decaestecker, Ellen and others}, | ||
| journal={Scientific data}, | ||
| volume={3}, | ||
| pages={160030}, | ||
| year={2016}, | ||
| publisher={Nature Publishing Group} | ||
| } | ||
|
|
||
| @article{orsini2018early, | ||
| title={Early transcriptional response pathways in Daphnia magna are coordinated in networks of crustacean-specific genes}, | ||
| author={Orsini, Luisa and Brown, James B and Shams Solari, Omid and Li, Dong and He, Shan and Podicheti, Ram and Stoiber, Marcus H and Spanier, Katina I and Gilbert, Donald and Jansen, Mieke and others}, | ||
| journal={Molecular Ecology}, | ||
| volume={27}, | ||
| number={4}, | ||
| pages={886--897}, | ||
| year={2018} | ||
| } | ||
|
|
||
| @article{arbel2019exploiting, | ||
| title={Exploiting regulatory heterogeneity to systematically identify enhancers with high accuracy}, | ||
| author={Arbel, Hamutal and Basu, Sumanta and Fisher, William W and Hammonds, Ann S and Wan, Kenneth H and Park, Soo and Weiszmann, Richard and Booth, Benjamin W and Keranen, Soile V and Henriquez, Clara and others}, | ||
| journal={Proceedings of the National Academy of Sciences}, | ||
| volume={116}, | ||
| number={3}, | ||
| pages={900--908}, | ||
| year={2019}, | ||
| publisher={National Academy of Sciences} | ||
| } | ||
|
|
||
| @article{kvist2018pattern, | ||
| title={Pattern of DNA methylation in Daphnia: evolutionary perspective}, | ||
| author={Kvist, Jouni and Gon{\c{c}}alves Athan{\`a}sio, Camila and Shams Solari, Omid and Brown, James B and Colbourne, John K and Pfrender, Michael E and Mirbahai, Leda}, | ||
| journal={Genome biology and evolution}, | ||
| volume={10}, | ||
| number={8}, | ||
| pages={1988--2007}, | ||
| year={2018}, | ||
| publisher={Oxford University Press} | ||
| } | ||
|
|
||
| @article{pourbabaee2019large, | ||
| title={Large Deviations of Linear Models with Regularly-Varying Tails: Asymptotics and Efficient Estimation}, | ||
| author={Pourbabaee, Farzad and Solari, Omid Shams}, | ||
| journal={arxiv}, | ||
| volume={1903}, | ||
| number={12299}, | ||
| pages={24}, | ||
| year={2019} | ||
| } | ||
|
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||
| @article{solari2019sparse, | ||
| title={Sparse canonical correlation analysis via concave minimization}, | ||
| author={Solari, Omid S and Brown, James B and Bickel, Peter J}, | ||
| journal={arXiv preprint arXiv:1909.07947}, | ||
| year={2019} | ||
| } | ||
|
|
||
| @article{solari2019bloccs, | ||
| title={BLOCCS: Block Sparse Canonical Correlation Analysis With Application To Interpretable Omics Integration}, | ||
| author={Solari, Omid Shams and Safavi, Rojin and Brown, James B}, | ||
| journal={arXiv preprint arXiv:1909.07944}, | ||
| year={2019} | ||
| } | ||
|
|
||
| @article{shams2019large, | ||
| title={Large-Scale Interpretable Multi-View Learning for Very High-Dimensional Problems with}, | ||
| author={Shams Solari, Omid}, | ||
| year={2019} | ||
| } | ||
|
|
||
| @article{shams2019bloccs, | ||
| title={BLOCCS: Block Sparse Canonical Correlation Analysis With Application To Interpretable Omics Integration}, | ||
| author={Shams Solari, Omid and Safavi, Rojin and Brown, James B}, | ||
| journal={arXiv e-prints}, | ||
| pages={arXiv--1909}, | ||
| year={2019} | ||
| } | ||
|
|
||
| @phdthesis{shams2019large, | ||
| title={Large-Scale Interpretable Multi-View Learning for Very High-Dimensional Problems with Application to Multi-Omic Data}, | ||
| author={Shams Solari, Omid}, | ||
| year={2019}, | ||
| school={UC Berkeley} | ||
| } | ||
|
|
||
| @phdthesis{solari2019large, | ||
| title={Large-Scale Interpretable Multi-View Learning for Very High-Dimensional Problems with Application to Multi-Omic Data}, | ||
| author={Solari, Omid Shams}, | ||
| year={2019}, | ||
| school={University of California, Berkeley} | ||
| } | ||
|
|
||
| @article{kvistpattern, | ||
| title={Pattern of DNA methylation in Daphnia}, | ||
| author={Kvist, Jouni and Athan{\`a}sio, Camila Gon{\c{c}}alves and Solari, Omid Shams and Brown, James and Colbourne, John and Pfrender, Michael E and Mirbahai, Leda} | ||
| } | ||
|
|
||
| @article{pourbabaee2019large, | ||
| title={Large Deviations of Factor Models with Regularly-Varying Tails: Asymptotics and Efficient Estimation}, | ||
| author={Pourbabaee, Farzad and Solari, Omid Shams}, | ||
| journal={arXiv preprint arXiv:1903.12299}, | ||
| year={2019} | ||
| } | ||
|
|
||
| @article{pourbabaee2022tail, | ||
| title={Tail Probability Estimation of Factor Models with Regularly-Varying Tails: Asymptotics and Efficient Estimation}, | ||
| author={Pourbabaee, Farzad and Shams Solari, Omid}, | ||
| journal={Available at SSRN 4078304}, | ||
| year={2022} | ||
| } | ||
|
|
||
| @article{gafni2021cell, | ||
| title={Cell-free DNA fragments inform epigenomic mechanisms for early detection of breast cancer}, | ||
| author={Gafni, Erik and Harvey, Adam and Jaroszewicz, Artur and Solari, Omid Shams and Landolin, Jane and Barbirou, Mouadh and Miller, Amanda and Tonellato, Peter J and Kundaje, Anshul and Jeffrey, Stefanie S and others}, | ||
| journal={Cancer Research}, | ||
| volume={81}, | ||
| number={13\_Supplement}, | ||
| pages={2105--2105}, | ||
| year={2021}, | ||
| publisher={AACR} | ||
| } | ||
|
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||
| @misc{myer2024comparison, | ||
| title={Comparison of colorectal cancer (CRC) characteristics across genetic ancestries: Implications for early cancer detection (ECD).}, | ||
| author={Myer, Parvathi and Srinivasan, Preethi and Bristow, Sara L and Krinshpun, Shifra and Solari, Omid and Aushev, Vasily N and Jurdi, Adham A and Liu, Minetta C and Mitchell, Breeana L and Aleshin, Alexey and others}, | ||
| year={2024}, | ||
| publisher={American Society of Clinical Oncology} | ||
| } | ||
|
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||
| @misc{solari2024comprehensive, | ||
| title={Comprehensive analysis of differentially methylated regions in colorectal cancer (CRC).}, | ||
| author={Solari, Omid and Constantin, Tudor and Jiang, Yuqian and Chan, Wengching and Tunc, Ilker and Srinivasan, Preethi and Kordi, Misagh and Santaguida, Marianne and Mitchell, Breeana L and Aleshin, Alexey and others}, | ||
| year={2024}, | ||
| publisher={American Society of Clinical Oncology} | ||
| } | ||
|
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||
| @article{srinivasan2024circulating, | ||
| title={Circulating differential methylation allele fraction (DMAF) strongly correlates with circulating tumor DNA (ctDNA) variant allele fraction (VAF)}, | ||
| author={Srinivasan, Preethi and Chen, Tzu-Chun and Haghshenas, Ehsan and Kordi, Misagh and Tunc, Ilker and Chan, Wenching and Solari, Omid Shams and Babiarz, Joshua and Nakamura, Yoshiaki and Yoshino, Takayuki and others}, | ||
| journal={Cancer Research}, | ||
| volume={84}, | ||
| number={6\_Supplement}, | ||
| pages={2409--2409}, | ||
| year={2024}, | ||
| publisher={The American Association for Cancer Research} | ||
| } | ||
|
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||
| @article{myer2024sa1175, | ||
| title={Sa1175 COMPARISON OF COLORECTAL CANCER (CRC) CHARACTERISTICS ACROSS GENETIC ANCESTRIES: IMPLICATIONS FOR EARLY CANCER DETECTION}, | ||
| author={Myer, Parvathi A and Srinivasan, Preethi and Bristow, Sara L and Krinshpun, Shifra and Solari, Omid Shams and Aushev, Vasily N and Jurdi, Adham and Liu, Minetta C and Mitchell, Breeana L and Aleshin, Alexey and others}, | ||
| journal={Gastroenterology}, | ||
| volume={166}, | ||
| number={5}, | ||
| pages={S--373}, | ||
| year={2024}, | ||
| publisher={WB Saunders} | ||
| } |