Repositories list

• BiomarkerDiscoveryToolkit

  Public
  R package for biomarker discovery (e.g. for drug sensitivity in cell lines)

  R

  •

  Other

  •0•0•0•0•Updated Oct 3, 2024Oct 3, 2024

• humanmine-bio-sources

  Public
  Data sources for HumanMine

  Java

  •4•0•0•0•Updated Jul 26, 2024Jul 26, 2024

• Proteomics_QC_public

  Public
  Quality control pipeline for shotgun proteomics based on Nextflow, OpenMS and R Markdown

  HTML

  •

  MIT License

  •1•0•0•0•Updated Jul 29, 2022Jul 29, 2022

• ML_RNA_methylation

  Public
  Python

  •

  BSD 2-Clause "Simplified" License

  •2•0•0•0•Updated Jan 24, 2022Jan 24, 2022

• intermine-general-converter

  Public
  A prototype tool/script for automatically creating Java converter code for the InterMine software from a given configuration file

  Python

  •

  GNU Lesser General Public License v2.1

  •1•0•0•0•Updated Feb 1, 2021Feb 1, 2021

• CancerTargetPrediction

  Public
  Code for the manuscript "Genome-wide investigation of gene-cancer associations for the prediction of novel therapeutic targets in oncology"

  Python

  •

  MIT License

  •3•8•0•0•Updated May 26, 2020May 26, 2020

• NucleicAcidSearchEngine-coverage-plot

  Public
  Code for generating sequence coverage plots from NucleicAcidSearchEngine results

  R

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Mar 24, 2020Mar 24, 2020