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    111 repositories

    • metadata-viewer

      Public
      Generic metadata viewer
      core
      Python
      •
      GNU General Public License v3.0
      •0•0•3•0•Updated Mar 28, 2025Mar 28, 2025

    • scipion-em-cryosparc2

      Public
      Plugin to use cryoSPARC2 programs within the Scipion framework
      spa
      Python
      •
      GNU General Public License v3.0
      •0•2•10•0•Updated Mar 27, 2025Mar 27, 2025

    • scipion-em

      Public
      Base Scipion plugin defining objects and protocols for EM
      spacoretomo
      Python
      •
      GNU General Public License v3.0
      •5•9•22•1•Updated Mar 27, 2025Mar 27, 2025

    • scipion-pyworkflow

      Public
      Underlying pyworkflow module for the Scipion framework
      core
      Python
      •
      GNU General Public License v3.0
      •6•6•37•1•Updated Mar 27, 2025Mar 27, 2025

    • scipion-em-reweighting

      Public
      scipion plugin for ensemble reweighting
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Mar 27, 2025Mar 27, 2025

    • scipion-em-tomo

      Public
      Base tomography Scipion plugin with data model definition
      tomo
      Python
      •
      GNU General Public License v3.0
      •5•9•39•1•Updated Mar 27, 2025Mar 27, 2025

    • scipion-em-tomosegmemtv

      Public
      Scipion plugin for segmentation and annotation of membranes (with tomoSegmenTV and membSegAnnotator)
      tomo
      Python
      •
      GNU General Public License v3.0
      •0•4•2•1•Updated Mar 27, 2025Mar 27, 2025

    • docs

      Public
      Scipion documentation repository
      other
      Python
      •
      GNU General Public License v3.0
      •7•1•2•2•Updated Mar 27, 2025Mar 27, 2025

    • scipion-em-datamanager

      Public
      A Scipion plugin to make depositions or retrieve data to/from several data portals
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 24, 2025Mar 24, 2025

    • scipion-em-prody

      Public
      Scipion plugin for ProDy
      Python
      •
      GNU General Public License v3.0
      •1•4•9•2•Updated Mar 22, 2025Mar 22, 2025

    • scipion-em-imod

      Public
      Plugin to use some of the Tomography tools from IMOD in Scipion
      tomo
      Python
      •
      GNU General Public License v3.0
      •2•2•18•2•Updated Mar 21, 2025Mar 21, 2025

    • scipion-em-warp

      Public
      Plugin to use Warp programs within the Scipion framework
      spatomo
      Python
      •
      GNU General Public License v3.0
      •0•0•0•1•Updated Mar 20, 2025Mar 20, 2025

    • scipion-em-topaz

      Public
      Scipion plugin to integrate Topaz particle picker
      spa
      Python
      •
      GNU General Public License v3.0
      •0•0•2•0•Updated Mar 20, 2025Mar 20, 2025

    • scipion-em-emantomo

      Public
      Plugin to use Eman2 tomography programs within the Scipion framework
      tomo
      Python
      •
      GNU General Public License v3.0
      •0•2•6•0•Updated Mar 20, 2025Mar 20, 2025

    • scipion-em-reliontomo

      Public
      Plugin to use Relion tomography programs within the Scipion framework
      tomo
      Python
      •
      GNU General Public License v3.0
      •1•1•5•0•Updated Mar 19, 2025Mar 19, 2025

    • scipion-em-fidder

      Public
      tomo
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 19, 2025Mar 19, 2025

    • scipion-em-tomo3d

      Public
      Plugin for the software of Jose Jesus Fernandez
      tomo
      Python
      •
      GNU General Public License v3.0
      •0•0•3•0•Updated Mar 19, 2025Mar 19, 2025

    • scipion-em-deepfinder

      Public
      Scipion plugin for deepfinder (tomography picker)
      tomo
      Python
      •
      GNU General Public License v3.0
      •0•3•2•0•Updated Mar 19, 2025Mar 19, 2025

    • scipion-em-aretomo

      Public
      Plugin to use AreTomo within the Scipion framework
      tomo
      Python
      •
      GNU General Public License v3.0
      •0•2•2•0•Updated Mar 19, 2025Mar 19, 2025

    • scipion-em-smartscope

      Public
      Plugin to manage the interaction with the SmartScope framework.
      Python
      •
      GNU General Public License v3.0
      •0•4•1•1•Updated Mar 19, 2025Mar 19, 2025

    • scipion-em-kiharalab

      Public
      Utilities from Kihara Lab
      scipionkiharalab
      Python
      •
      GNU General Public License v3.0
      •1•0•0•1•Updated Mar 18, 2025Mar 18, 2025

    • scipion-em-flexutils

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•3•0•Updated Mar 17, 2025Mar 17, 2025

    • scipion-em-dynamo

      Public
      Dynamo tomography plugin for Scipion
      tomo
      Python
      •
      GNU General Public License v3.0
      •0•1•4•0•Updated Mar 17, 2025Mar 17, 2025

    • scipion-em-roodmus

      Public
      atom
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 17, 2025Mar 17, 2025

    • scipion-em-miffi

      Public
      tomo
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 13, 2025Mar 13, 2025

    • scipion-em-facilities

      Public
      Plugin for Cryo-EM facilities to be used within Scipion framework
      other
      Python
      •
      GNU General Public License v3.0
      •1•0•6•2•Updated Mar 13, 2025Mar 13, 2025

    • scipion-em-repic

      Public
      tomo
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 11, 2025Mar 11, 2025

    • scipion-em-cryoten

      Public
      Wrappers to CryoTen (https://github.com/jianlin-cheng/cryoten)
      atom
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Mar 6, 2025Mar 6, 2025

    • scipion-em-phenix

      Public
      wrappers for phenix package
      atom
      Python
      •
      GNU General Public License v3.0
      •1•3•3•3•Updated Mar 4, 2025Mar 4, 2025

    • scipion-em-isonet

      Public
      This plugin is a Scipion wrapper for Isonet, a cryo-electron tomography software for filling the missing wedge information. The official webpage of the software is https://isonetcryoet.com/ and the source code can be found at https://github.com/IsoNet-cryoET/IsoNet
      tomo
      Python
      •
      GNU General Public License v3.0
      •1•20•2•1•Updated Mar 3, 2025Mar 3, 2025