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    5 repositories

    • BGCViz

      Public
      BGCViz - a shiny web app, which uses genomic coordinates of BGCs from different sources for a comprehensive comparison.
      plotsclustersbgcantismash-bgc-annotationsantismash-data
      R
      •
      MIT License
      •5•6•2•1•Updated Mar 25, 2024Mar 25, 2024

    • BGCViz-datasets

      Public
      1•0•0•0•Updated Jun 2, 2022Jun 2, 2022

    • dna-data-compressor

      Public
      A small javascript tool for DNA data compression. Can compress the DNA string up to 4-8 times.
      compressiondna
      JavaScript
      •
      MIT License
      •0•1•0•0•Updated Feb 2, 2021Feb 2, 2021

    • GeneticPlotter

      Public
      A tool with nice GUI to visualize the codon usage frequencies in whole genomes
      pythonguittacodon-usagestreptomyces
      Python
      •
      MIT License
      •1•3•0•0•Updated Feb 2, 2021Feb 2, 2021

    • rRNADif

      Public
      rRNADif is a method to measure intragenomic 16S rRNA variability within the desired genome sequence against a chosen set of organisms. The app is calculating ML phylogenetic tree and uses mean/median branch length within a set of 16S rRNA as a measure of variability between them
      genomicstaxonomyphylogenetics16spipeline
      Shell
      •
      MIT License
      •1•1•0•0•Updated Feb 2, 2021Feb 2, 2021