Repositories list

• oloPATH

  Public
  Package for metabolic pathway analysis

  Python

  •0•0•0•0•Updated Oct 31, 2024Oct 31, 2024

• pyRetip

  Public
  Jupyter Notebook

  •1•4•0•1•Updated Aug 13, 2024Aug 13, 2024

• PALS

  Public
  Ranking metabolite (and other omics sets) by their activity levels via SVD

  Jupyter Notebook

  •

  MIT License

  •1•0•0•0•Updated Jul 31, 2024Jul 31, 2024

• pyChemometrics

  Public
  pyChemometrics - Objects for multivariate analysis of chemometric and metabonomic datasets

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •14•0•0•0•Updated Jun 18, 2024Jun 18, 2024

• Retip

  Public
  Retip - Retention Time prediction for metabolomics

  metabolomicslcmsretention-time

  R

  •16•31•10•0•Updated Jun 6, 2024Jun 6, 2024

• Retiplib

  Public
  R

  •2•2•0•0•Updated Jun 5, 2024Jun 5, 2024

• elabftw

  Public
  📓 eLabFTW is the most popular open source electronic lab notebook for research labs.

  PHP

  •

  GNU Affero General Public License v3.0

  •218•0•0•0•Updated Feb 5, 2024Feb 5, 2024

• microbiomeExplorer

  Public
  The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or through a Shiny application. Written by Janina Reeder and Joseph N. Paulson.

  R

  •

  Other

  •21•0•0•0•Updated Jul 14, 2023Jul 14, 2023

• ChemRICH

  Public
  Chemical Similarity Enrichment analysis of metabolomics datasets

  R

  •13•0•0•0•Updated Jul 14, 2023Jul 14, 2023

• NetID

  Public
  A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery

  HTML

  •

  GNU General Public License v3.0

  •25•0•0•0•Updated Jul 14, 2023Jul 14, 2023

• HormonomicsDB

  Public
  R

  •1•0•0•0•Updated Nov 26, 2021Nov 26, 2021

• 3D-MIL-QSAR

  Public
  Python source code for 3D/MI/QSAR models

  Python

  •18•0•0•0•Updated Dec 16, 2020Dec 16, 2020