Repositories list

• .github

  Public
  0•0•0•0•Updated Apr 7, 2025Apr 7, 2025

• hudson

  Public
  Pyseq 4i spatial pipeline

  Python

  •

  GNU General Public License v3.0

  •2•2•4•1•Updated Apr 4, 2025Apr 4, 2025

• pyseq-image

  Public
  Python

  •

  GNU General Public License v3.0

  •0•0•3•0•Updated Apr 2, 2025Apr 2, 2025

• INLAomics

  Public
  Bayesian Hierchical models for multiomic spatial transcriptomics using INLA

  R

  •

  MIT License

  •0•0•0•0•Updated Mar 11, 2025Mar 11, 2025

• celery-pipeline

  Public
  Python

  •0•0•0•0•Updated Mar 5, 2025Mar 5, 2025

• PySeq2500

  Public
  Control an Illumina HiSeq 2500 System

  Python

  •

  MIT License

  •11•20•1•6•Updated Oct 22, 2024Oct 22, 2024

• shmseq

  Public
  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •1•8•0•0•Updated Feb 3, 2024Feb 3, 2024

• PICASSO

  Public
  Development of PICASSO plugin for napari

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •3•16•1•0•Updated Jan 17, 2023Jan 17, 2023

• Kedmi-CITEseq

  Public
  Code for the Kedmi et al paper

  Jupyter Notebook

  •1•0•1•0•Updated Aug 15, 2022Aug 15, 2022

• pyseq2501

  Public
  Use the Illumina HiSeq 2000/2500 as an epifluorescence microscope with fluidics control.

  Python

  •

  GNU General Public License v3.0

  •4•0•0•0•Updated May 2, 2022May 2, 2022

• pyseq2501-web

  Public
  Svelte

  •

  GNU General Public License v2.0

  •2•0•0•0•Updated Apr 14, 2022Apr 14, 2022

• PySeq2500-OLD

  Public
  Python

  •

  MIT License

  •0•1•0•0•Updated Sep 25, 2019Sep 25, 2019

• microscope-interfaces

  Public
  A collection of microscope hardware interfaces in various languages and implementations.

  Python

  •2•0•0•0•Updated Jan 18, 2019Jan 18, 2019