Repositories list

• nipype

  Public
  Workflows and interfaces for neuroimaging packages

  data-sciencebig-dataworkflow-engine+ 6dataflowneuroimagingdataflow-programmingbrain-imagingbrainwebpython

  Python

  •

  Other

  •530•750•401•20•Updated Nov 11, 2024Nov 11, 2024

• nitime

  Public
  Timeseries analysis for neuroscience data

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •83•244•18•1•Updated Nov 6, 2024Nov 6, 2024

• heudiconv

  Public
  Flexible DICOM conversion into structured directory layouts

  Python

  •

  Other

  •125•236•178•17•Updated Nov 5, 2024Nov 5, 2024

• nibabel

  Public
  Python package to access a cacophony of neuro-imaging file formats

  pythondicomneuroimaging+ 11niftitrktckbrain-imagingecatgiftistreamlines+ 4

  Python

  •

  Other

  •258•654•105•25•Updated Oct 25, 2024Oct 25, 2024

• nipy-wheels

  Public
  Python

  •2•0•1•0•Updated Oct 6, 2024Oct 6, 2024

• nipy

  Public
  Neuroimaging in Python FMRI analysis package

  Python

  •

  Other

  •145•383•30•6•Updated Oct 6, 2024Oct 6, 2024

• gradunwarp

  Public
  Gradient Unwarping in Python

  Python

  •

  Other

  •37•0•0•0•Updated Oct 4, 2024Oct 4, 2024

• nitransforms

  Public
  a standalone fork of nipy/nibabel#656

  Python

  •

  MIT License

  •16•28•29•4•Updated Sep 21, 2024Sep 21, 2024

• nilabels

  Public
  Tools to automate simple manipulations and measurements of medical images and segmentations in nifti format.

  Python

  •

  MIT License

  •2•21•0•0•Updated Jun 18, 2024Jun 18, 2024

• nipype_tutorial

  Public
  This is a fork. Do not clone from this repository.

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •69•0•0•0•Updated Mar 4, 2024Mar 4, 2024

• data-packages

  Public
  Serving nipy data packages via Github pages

  Python

  •0•0•0•0•Updated Dec 21, 2023Dec 21, 2023

• PySurfer

  Public
  Cortical neuroimaging visualization in Python

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •98•244•26•4•Updated Dec 15, 2023Dec 15, 2023

• nipy.github.io

  Public
  Main website for the Neuroimaging in Python community

  HTML

  •10•8•7•1•Updated Dec 13, 2023Dec 13, 2023

• discussions

  Public
  0•0•0•0•Updated Aug 26, 2023Aug 26, 2023

• heudiconv-joss-paper

  Public archive
  Repository to prepare HeuDiConv paper

  Python

  •

  MIT License

  •22•2•0•0•Updated Jul 17, 2023Jul 17, 2023

• quickshear

  Public
  Quickshear Defacing for Neuroimages

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •7•11•0•0•Updated May 16, 2023May 16, 2023

• dmriprep

  Public archive
  MOVED TO https://github.com/nipreps/dmriprep

  Python

  •

  Other

  •11•17•33•13•Updated Dec 26, 2022Dec 26, 2022

• niwidgets

  Public
  Neuroimaging widgets for jupyter notebooks

  Jupyter Notebook

  •

  Other

  •34•84•17•14•Updated Dec 8, 2022Dec 8, 2022

• napari-nibabel

  Public
  A napari plugin that uses nibabel to display medical images

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •4•3•2•1•Updated Oct 15, 2021Oct 15, 2021

• mindboggle

  Public template
  Automated anatomical brain label/shape analysis software (+ website)

  image-processingpython3image-analysis+ 6surfacesshape-descriptorbrain-imagingmesh-processingshape-analysispython

  Python

  •

  Other

  •53•146•21•1•Updated Apr 8, 2021Apr 8, 2021

• mindboggle-assets

  Public
  Media assets for the mindboggle website

  0•0•0•0•Updated Jun 9, 2019Jun 9, 2019

• workshops

  Public
  Brain imaging workshops

  reproducible-researchneuroimagingpython

  Jupyter Notebook

  •29•15•0•4•Updated Apr 27, 2019Apr 27, 2019

• nipy-artwork

  Public
  Fliers, images, etc

  TeX

  •

  Other

  •15•9•0•0•Updated Jan 27, 2019Jan 27, 2019

• brainx

  Public
  Tools for analysis of brain imaging-derived networks, based on NetworkX

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •28•39•2•2•Updated Jan 27, 2019Jan 27, 2019

• nibotmi

  Public
  NIPY BuildBot Master Instance

  Python

  •

  BSD 2-Clause "Simplified" License

  •9•11•6•1•Updated Feb 17, 2018Feb 17, 2018

• nireg

  Public
  Brain image registration package

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •12•30•4•0•Updated Jun 21, 2016Jun 21, 2016

• mindboggle-data

  Public
  0•0•0•0•Updated May 4, 2016May 4, 2016

• blog

  Public
  Makefile

  •1•1•0•0•Updated Jan 31, 2015Jan 31, 2015

• PyLocator

  Public
  Localization of EEG-electrodes from MRI-recordings

  Python

  •

  Other

  •3•7•1•0•Updated Jan 15, 2014Jan 15, 2014

• nibotme-logs

  Public
  NIPY BuildBot Master Instance (buildbot logs)

  0•0•0•0•Updated Oct 27, 2013Oct 27, 2013