Repositories list

• bam2tensor

  Public
  Convert methylation data to sparse objects for machine learning.

  machine-learningmethylation

  Python

  •

  MIT License

  •0•1•0•1•Updated Feb 1, 2025Feb 1, 2025

• OMRSE

  Public
  The Ontology for Modeling and Representation of Social Entities

  obofoundry

  Makefile

  •

  Creative Commons Attribution 4.0 International

  •7•14•30•0•Updated Jan 24, 2025Jan 24, 2025

• geographical-entity-ontology

  Public
  An ontology and inventory of geopolitical entities (such as sovereign states and their administrative subdivisions) as well as various geographical regions (including but not limited to the specific ones over which the governments have jurisdiction)

  Shell

  •

  Creative Commons Attribution 4.0 International

  •5•10•13•2•Updated Jan 22, 2025Jan 22, 2025

• onto-intersect

  Public
  Given two OWL files as input, outputs all the classes and properties they have in common.

  Shell

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Jan 6, 2025Jan 6, 2025

• dron

  Public
  Makefile

  •1•10•4•1•Updated Jan 2, 2025Jan 2, 2025

• rt2

  Public
  Referent Tracking 2.0

  Python

  •

  Apache License 2.0

  •1•0•0•0•Updated Nov 4, 2024Nov 4, 2024

• rt2n4j

  Public
  Python

  •

  Apache License 2.0

  •1•0•0•1•Updated Oct 31, 2024Oct 31, 2024

• rt2reflector

  Public
  Referent Tracking ETL for RT2.0

  Apache License 2.0

  •1•0•0•1•Updated Oct 31, 2024Oct 31, 2024

• mcwdsi.github.io

  Public
  Website for the Data Science Institute at the Medical College of Wisconsin

  GNU General Public License v3.0

  •0•0•0•0•Updated Jun 30, 2024Jun 30, 2024

• rts_core

  Public
  Core referent tracking fundamentals

  Java

  •2•0•0•0•Updated Jun 26, 2024Jun 26, 2024

• general-conversion-to-owl2

  Public
  Java code to convert conventional data into to OWL2

  Java

  •

  Apache License 2.0

  •1•0•0•0•Updated Jun 12, 2024Jun 12, 2024

• RTDB-Neo4J

  Public
  a Neo4J based implementation of Referent Tracking

  Java

  •

  Apache License 2.0

  •0•0•0•0•Updated Jun 7, 2024Jun 7, 2024

• iso8601

  Public
  Implementation of ISO 8601 date/time formatting standard

  Java

  •

  Apache License 2.0

  •0•0•0•0•Updated Jun 7, 2024Jun 7, 2024

• common_utils

  Public
  Java

  •

  Apache License 2.0

  •0•0•0•0•Updated Jun 7, 2024Jun 7, 2024

• obc-pubmed

  Public
  midasobc

  Python

  •

  Apache License 2.0

  •0•0•0•1•Updated May 21, 2024May 21, 2024

• m1-df-only

  Public
  Implementation of M1 with data format matching only

  GNU General Public License v3.0

  •0•0•0•0•Updated Mar 17, 2024Mar 17, 2024

• .github

  Public
  MCW DSI overview

  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Oct 6, 2023Oct 6, 2023

• dron-chebi-mapper

  Public
  Calls BioPortal API to look for matches in ChEBI to DrOn ingredient terms derived from RxNorm

  translationchebidron

  Java

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Aug 17, 2023Aug 17, 2023

• dron-query

  Public
  command line app for querying Drug Ontology using DL queries via reasoner

  dronowl-query

  Java

  •0•1•0•0•Updated Aug 17, 2023Aug 17, 2023

• obc-ide-owl

  Public
  OWL files for the OBC.ide project

  mdcmidasobc

  1•1•1•0•Updated Dec 10, 2022Dec 10, 2022

• mdc-sparql

  Public
  sparql queries for the midas digital commons

  mdcmidas

  0•0•0•0•Updated Dec 10, 2022Dec 10, 2022

• ORCS

  Public
  Ontology for Representing CDM Semantics

  ontologycdm

  Makefile

  •0•0•0•0•Updated Mar 11, 2022Mar 11, 2022

• midas-data-mapping-to-apollo-sv

  Public
  midasmccmidasowl

  0•0•0•0•Updated Nov 28, 2021Nov 28, 2021

• mdc_search

  Public
  SPARQL queries for searching MIDAS Digital Commons for valid combinations of datasets and software

  mdcmidas

  JavaScript

  •0•0•0•0•Updated May 7, 2021May 7, 2021

• mdc_meter

  Public
  SPARQL queries to compute FAIR metrics in MIDAS Digital Commons

  mdcmidas

  JavaScript

  •0•0•0•0•Updated May 7, 2021May 7, 2021

• mdc_tree

  Public
  mdcmidas

  JavaScript

  •0•0•0•0•Updated May 7, 2021May 7, 2021

• mcc-portal-rdf-constraints

  Public
  midasmcc

  0•0•0•0•Updated Feb 19, 2021Feb 19, 2021

• PCORowl

  Public archive
  Modelling the PCORnet CDM in an OBO Compliant OWL Ontology

  Python

  •

  Other

  •0•0•0•1•Updated Dec 23, 2020Dec 23, 2020

• mdc-stardog-scripts

  Public
  Command line shell scripts for loading, backing up, saving off data from the Stardog backend of the MIDAS Digital Commons and OBC.ide

  mdcmidas

  Shell

  •0•0•0•0•Updated May 14, 2020May 14, 2020

• mdc-dats-processor

  Public
  A parsing script written in Python 3.5 that parses DATS JSON files for datasets in the MIDAS Digital Commons.

  mdcmidas

  Python

  •0•0•0•0•Updated May 3, 2019May 3, 2019