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    64 repositories

    • heron-admin

      Public
      Python
      •3•0•0•4•Updated Mar 10, 2025Mar 10, 2025

    • FatSegNet_pytorch

      Public
      A Fully Automated Deep Learning Pipeline for Adipose Segmentation on Abdominal Dixon MRI
      Python
      •
      Apache License 2.0
      •2•0•0•0•Updated Jan 29, 2025Jan 29, 2025

    • Phenotype_Data_Acquisition

      Public
      The repository for code and documentation produced by the N3C Phenotype and Data Acquisition workstream
      Python
      •35•0•0•0•Updated Jan 15, 2025Jan 15, 2025

    • ds-determined-tools

      Public
      Python
      •1•0•0•2•Updated Jan 2, 2025Jan 2, 2025

    • grouse

      Public
      Greater Plains Collaborative Reusable Unified Study Environment (GROUSE)
      Jupyter Notebook
      •
      MIT License
      •6•3•0•4•Updated Dec 10, 2024Dec 10, 2024

    • aou-ehr-file-check

      Public
      Python
      •
      MIT License
      •20•0•0•1•Updated Nov 19, 2024Nov 19, 2024

    • raw-data-repository

      Public
      PMI DRC data repositories and APIs
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •18•0•0•0•Updated Jun 27, 2024Jun 27, 2024

    • ops-data-service

      Public
      Tools for accessing the ops data api.
      Jupyter Notebook
      •3•1•0•1•Updated Jun 11, 2024Jun 11, 2024

    • i2b2-webclient

      Public
      Source code for the i2b2 Web Client
      JavaScript
      •
      Other
      •28•0•2•0•Updated May 1, 2024May 1, 2024

    • Broadsea

      Public
      Broadsea deploys the core OHDSI technology stack (Atlas & R Hades), using cross-platform Docker container technology.
      R
      •
      Apache License 2.0
      •64•0•0•0•Updated Apr 29, 2024Apr 29, 2024

    • leaf

      Public
      Leaf Clinical Data Explorer
      TypeScript
      •
      Other
      •50•0•0•0•Updated Jan 24, 2024Jan 24, 2024

    • REDCap-ADCEnglishSpanish

      Public
      REDCap export for ADC. Combines English and Spanish versions into one export.
      Python
      •1•1•0•5•Updated Dec 6, 2023Dec 6, 2023

    • oscar-study

      Public
      0•0•0•0•Updated Nov 30, 2023Nov 30, 2023

    • studyTeam

      Public
      IRB study team query tool
      jdbcinformaticscompliance
      Groovy
      •0•0•0•0•Updated Jul 27, 2023Jul 27, 2023

    • shrine-docker-image

      Public
      An unopinionated docker image for SHRINE
      Python
      •0•0•0•0•Updated May 24, 2023May 24, 2023

    • Backbone

      Public
      Provides backbone infrastructure elements for OHNLP toolsets.
      Java
      •
      Apache License 2.0
      •8•0•0•0•Updated Jan 30, 2023Jan 30, 2023

    • REDCap-ResidentEvaluations

      Public
      Export data out of REDCap using python API and runs monthly jobs
      Python
      •0•3•0•3•Updated Dec 9, 2022Dec 9, 2022

    • naaccr-tumor-data

      Public
      using NAACCR tumor registry data in i2b2, PCORNet CDM
      groovycancerclinical-researchclinical-datanaaccri2b2pcornet-cdm
      Python
      •3•5•28•23•Updated Dec 8, 2022Dec 8, 2022

    • i2p-transform

      Public
      i2b2 to PCORnet Common Data Model Transformation - requires i2b2 PCORnet ontology
      Python
      •
      Other
      •16•3•13•4•Updated Nov 21, 2022Nov 21, 2022

    • AKI_CDM_PY

      Public
      Jupyter Notebook
      •0•1•0•2•Updated Jul 26, 2022Jul 26, 2022

    • Check_cert

      Public
      Codes for chcking all the ssl certificates and POSTGRES certs are stable for the next 30 days
      0•0•0•0•Updated May 13, 2022May 13, 2022

    • REDCap-H3Export

      Public
      0•0•0•0•Updated May 12, 2022May 12, 2022

    • AKI_CDM

      Public
      HTML
      •11•8•0•3•Updated May 10, 2022May 10, 2022

    • imagemap

      Public
      Imagemap REDCap external module
      HTML
      •
      Other
      •34•0•0•0•Updated Feb 18, 2022Feb 18, 2022

    • covid19i2b2

      Public
      Instructions and database scripts for extracting COVID-19 related data from i2b2
      PLpgSQL
      •11•0•0•1•Updated Nov 30, 2021Nov 30, 2021

    • Phase2.1SqlDataExtraction

      Public
      SQL code to generate Phase 2.1 CSV files
      TSQL
      •
      Apache License 2.0
      •4•0•0•1•Updated Nov 30, 2021Nov 30, 2021

    • PhaseX.2SqlDataExtraction

      Public
      SQL and documentation to extract 4CE Phase 1.2 and 2.2 data files.
      PLpgSQL
      •
      Apache License 2.0
      •6•0•0•1•Updated Nov 20, 2021Nov 20, 2021

    • h2p-mapping

      Public
      Mapping the HERON i2b2 Ontology to the i2b2 PCORNet CDM Onotolgy for use with the i2p-transform
      Python
      •
      Other
      •4•1•1•1•Updated Sep 29, 2021Sep 29, 2021

    • pps-client

      Public
      A basic client for retrieving and updating Pleasant Password Server credentials
      Go
      •0•0•1•0•Updated Sep 29, 2021Sep 29, 2021

    • Phase2.1AKIRPackage

      Public
      R Package to run statistical analyses for COVID-19 patients with acute kidney injury.
      R
      •4•0•0•0•Updated Jun 25, 2021Jun 25, 2021