Repositories list

• visium_analysis

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Sep 19, 2024Sep 19, 2024

• LuminexTools

  Public
  Luminex related processing pipeline

  R

  •0•0•0•0•Updated Jun 28, 2024Jun 28, 2024

• OlinkApp

  Public
  R

  •0•0•0•0•Updated Jun 17, 2024Jun 17, 2024

• visium_segmentation

  Public
  Python

  •0•0•0•0•Updated Feb 22, 2024Feb 22, 2024

• visium_deconvolution

  Public
  Batchfile

  •0•0•0•0•Updated Feb 22, 2024Feb 22, 2024

• clustergrammer-gl

  Public
  WebGL Clustergrammer JavaScript Library

  webglbiologyheatmap+ 2reglhacktoberfest

  JavaScript

  •

  MIT License

  •18•23•26•14•Updated Aug 21, 2023Aug 21, 2023

• visium-clustergrammer2

  Public
  Spatial Transcriptomics Dashboard

  pythonwebgljupyter+ 4heatmapscrna-seqvoilavisium

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •5•28•11•1•Updated Jul 6, 2023Jul 6, 2023

• codex_dashboard

  Public
  Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •4•16•5•1•Updated Jul 6, 2023Jul 6, 2023

• himc_dockers

  Public
  Docker builds for all tools used by HIMC

  Dockerfile

  •0•0•0•0•Updated Mar 17, 2023Mar 17, 2023

• clustergrammer-widget2-deprecated

  Public
  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•25•Updated Jan 4, 2023Jan 4, 2023

• clustergrammer2

  Public
  "Dimensionality-increasing" data visualization tool and interactive WebGL Jupyter widget built for single-cell data.

  visualizationjavascriptwebgl+ 8binderbiologyheatmapreglhacktoberfestjupyter-widgetsbinder-ready+ 1

  HTML

  •

  MIT License

  •20•116•29•28•Updated Dec 30, 2022Dec 30, 2022

• cytutils

  Public
  Cytometry quality control and reproducibility utilities

  R

  •

  GNU General Public License v3.0

  •7•8•2•1•Updated Aug 23, 2022Aug 23, 2022

• VEGF_A_Hormigo

  Public
  0•0•0•0•Updated Jun 22, 2022Jun 22, 2022

• LuminexApp

  Public
  R

  •0•0•0•0•Updated Mar 18, 2022Mar 18, 2022

• recursive_gsea

  Public
  HTML

  •0•0•0•0•Updated Dec 9, 2021Dec 9, 2021

• clustergrammer2-notebooks

  Public
  Examples using Clustergrammer2 to explore high-dimensional datasets.

  bioinformaticsbinderjupyter+ 3scrna-seqbinder-readynotebook

  Jupyter Notebook

  •11•40•8•0•Updated Aug 24, 2020Aug 24, 2020

• covid-19_sinai_reviews

  Public
  Jupyter Notebook

  •

  Other

  •7•8•1•2•Updated Jul 31, 2020Jul 31, 2020

• biomed-scientist-against-visa-bans

  Public
  HTML

  •1•0•0•0•Updated Jul 13, 2020Jul 13, 2020

• rapids-single-cell-examples

  Public
  Examples of single-cell genomic analysis accelerated with RAPIDS

  Jupyter Notebook

  •

  Apache License 2.0

  •69•1•0•0•Updated May 29, 2020May 29, 2020

• covid-19_tenoever

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Apr 27, 2020Apr 27, 2020

• LegendScreen_CyTOF

  Public
  Jupyter Notebook

  •1•0•0•0•Updated Apr 21, 2020Apr 21, 2020

• himc_helper_functions

  Public
  Python

  •0•0•8•0•Updated Feb 22, 2020Feb 22, 2020

• clustergrammer2-signatures

  Public
  Collection of cell type and cell state signatures built to easily integrate with Clustergrammer2 single cell toolkit.

  0•0•1•0•Updated Feb 9, 2020Feb 9, 2020

• clustergrammer2-test

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Nov 10, 2019Nov 10, 2019

• cellranger-aws-pipeline-docs

  Public
  Python

  •2•1•0•2•Updated Sep 25, 2019Sep 25, 2019

• gaussian-density

  Public
  Using voila with bqplot to visualize gaussian density

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •9•0•0•0•Updated Jul 31, 2019Jul 31, 2019

• voila

  Public
  From Jupyter notebooks to standalone web applications and dashboards

  Python

  •

  Other

  •504•0•0•0•Updated Jul 31, 2019Jul 31, 2019

• codex_spatial_spleen

  Public
  HTML

  •0•0•0•0•Updated Jul 31, 2019Jul 31, 2019

• clustergrammer2_test

  Public
  HTML

  •0•0•0•0•Updated Jul 13, 2019Jul 13, 2019

• clustergrammer-binder-upload-test

  Public
  0•0•0•0•Updated Jul 13, 2019Jul 13, 2019