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    6 repositories

    • rendseq

      Public
      rendseq automates analysis of RendSeq data, right now can automatically identify peaks, more features coming soon!
      HTML
      •
      MIT License
      •3•0•17•1•Updated Jun 2, 2024Jun 2, 2024

    • MTC_2023_Scripts

      Public
      Collection of analysis scripts for processing raw data and generating figures for the MTC project
      Jupyter Notebook
      •2•0•0•1•Updated Oct 23, 2023Oct 23, 2023

    • IGVBrowse

      Public
      A shiny app for browsing data with Rend-Seq
      R
      •0•0•0•0•Updated Feb 1, 2023Feb 1, 2023

    • UTR_Prediction

      Public
      Scratch notebooks for the prediction of 5' and 3' UTRs from Rend-seq data
      HTML
      •0•0•0•0•Updated Jun 21, 2022Jun 21, 2022

    • Herzel2022_RNAdemographics

      Public
      This repository complements the manuscript "Ubiquitous mRNA decay fragments in E. coli redefine the functional transcriptome".
      Shell
      •0•0•0•0•Updated Feb 18, 2022Feb 18, 2022

    • Ram_Y_complex

      Public
      Work accompanying Diverse Primary and Secondary Structural Features Are Associated With Y Complex-Dependent mRNA Maturation in Bacillus subtilis
      2•0•0•0•Updated Jan 16, 2020Jan 16, 2020