Rob J. Gifford Lab

All

48 repositories

NCBI-HCV-GLUE
Public
Extension to HCV-GLUE - contains all published HCV data from NCBI, plus analysis logic for HCV genomes.
bioinformatics microbial-genomics viral-genomics bioinformatics-databases antiviral-resistance hepatitis-c virus-evolution virus-genomes
JavaScript
•0•0•0•0•Updated Nov 15, 2024Nov 15, 2024
RVdb
Public
A GLUE project for retroviruses (family Retroviridae)
JavaScript
•0•0•0•0•Updated Nov 14, 2024Nov 14, 2024
Lentivirus-GLUE-FIV
Public
Extension to Lentivirus-GLUE - contains all published feline lentivirus data from NCBI
JavaScript
•
GNU General Public License v3.0
•0•0•0•0•Updated Nov 14, 2024Nov 14, 2024
Lentivirus-GLUE-Bovine
Public
Extension to Lentivirus-GLUE - contains all published bovine lentivirus data from NCBI
JavaScript
•
GNU General Public License v3.0
•0•0•0•0•Updated Nov 14, 2024Nov 14, 2024
.github
Public
Organisation overview
0•0•0•0•Updated Nov 12, 2024Nov 12, 2024
Flu-GLUE
Public
A GLUE project for influenzaviruses
Perl
•
GNU General Public License v3.0
•0•1•0•0•Updated Nov 6, 2024Nov 6, 2024
NCBI-Dengue-GLUE
Public
Extension to Dengue-GLUE - adds all published DENV data from NCBI.
JavaScript
•0•0•0•0•Updated Nov 6, 2024Nov 6, 2024
Lentivirus-GLUE-SRLV
Public
Extension to Lentivirus-GLUE - adds all published small ruminant lentivirus data from NCBI, plus analysis logic
JavaScript
•0•0•0•0•Updated Nov 6, 2024Nov 6, 2024
Lentivirus-GLUE-Primates
Public
Extension to Lentivirus-GLUE - adds all published primate lentivirus data from NCBI
JavaScript
•
GNU General Public License v3.0
•0•0•0•0•Updated Nov 4, 2024Nov 4, 2024
IFNL-Evolution
Public
Resources supporting comparative and phylogenetic analysis of IFNL genes
reproducible-research glue comparative-genomics molecular-biology immunity interferon
JavaScript
•0•0•0•0•Updated Nov 3, 2024Nov 3, 2024
Lentivirus-GLUE
Public
A GLUE project for Lentiviruses (genus Lentivirus)
comparative-genomics sequence-analysis retrovirus virus-evolution paleovirology
JavaScript
•0•0•0•0•Updated Nov 3, 2024Nov 3, 2024
A3-Evolution
Public
Resources supporting comparative and phylogenetic analysis of APOBEC3 genes
Python
•2•1•0•1•Updated Nov 3, 2024Nov 3, 2024
BTV-GLUE
Public
A GLUE project for Bluetongue Virus
glue epidemiology microbial-genomics veterinary comparative-genomics microbial-evolution virus-evolution
JavaScript
•0•0•0•0•Updated Nov 1, 2024Nov 1, 2024
Lassa-GLUE
Public
A GLUE project for Lassa virus
JavaScript
•0•0•0•0•Updated Nov 1, 2024Nov 1, 2024
Parvovirus-GLUE
Public
A GLUE project for comparative genomic analysis of parvoviruses
reproducible-research glue open-science comparative-genomics aav gene-therapy virus-evolution paleovirology parvovirus
JavaScript
•0•1•0•0•Updated Oct 30, 2024Oct 30, 2024
Dengue-GLUE
Public
A GLUE project for dengue virus (DENV)
JavaScript
•0•0•0•0•Updated Oct 23, 2024Oct 23, 2024
Flu-H5N1
Public
JavaScript
•0•0•1•0•Updated Oct 21, 2024Oct 21, 2024
DIGS-for-EVEs
Public
An organised catalog of endogenous viral element (EVE) sequences identified via database-integrated genome screening (DIGS).
genomics evolution virology paleovirology
Perl
•0•0•0•0•Updated Oct 19, 2024Oct 19, 2024
Deltaretrovirus-GLUE
Public
A GLUE project for Deltaretroviruses
reproducible-research glue comparative-genomics bioinformatics-databases sequence-analysis retrovirus virus-evolution
JavaScript
•0•0•0•0•Updated Oct 15, 2024Oct 15, 2024
gluetools
Public
An open, platform-independent software toolkit for storage and interpretation of sequence data, implemented in Java.
genomics reproducible-research microbial-genomics comparative-genomics sequence-analysis virus-evolution
Java
•2•11•0•0•Updated Oct 13, 2024Oct 13, 2024
RABV-GLUE
Public
A GLUE project for Rabies Virus (RABV).
glue epidemiology sequence-analysis rabies virus-evolution genomic-epidemiology
JavaScript
•0•1•0•0•Updated Oct 9, 2024Oct 9, 2024
Filovirus-GLUE
Public
A GLUE project for comparative genomic analysis of filoviruses
comparative-genomics ebola sequence-analysis filovirus virus-evolution
JavaScript
•0•0•0•0•Updated Oct 9, 2024Oct 9, 2024
CRESS-GLUE
Public
A GLUE project for comparative genomic analysis of circular Rep-encoding single-stranded DNA (CRESS DNA) viruses
reproducible-research glue metagenomics microbial-genomics comparative-genomics virus-evolution
JavaScript
•0•0•0•0•Updated Oct 3, 2024Oct 3, 2024
HEV-GLUE
Public
A GLUE project for Hepatitis E Virus (HEV)
glue open-science epidemiology comparative-genomics hepatitis microbial-evolution virus-evolution
HTML
•0•0•0•0•Updated Oct 2, 2024Oct 2, 2024
Hepadnaviridae-GLUE
Public
A GLUE project for hepadnaviruses (family Hepadnaviridae)
genomics reproducible-research evolution open-science comparative-genomics bioinfomatics hepatitis virus-evolution paleovirology hepadnavirus
JavaScript
•0•0•0•0•Updated Oct 2, 2024Oct 2, 2024
HCV-GLUE
Public
A GLUE project for Hepatitis C virus (HCV)
docker bioinformatics-databases drug-resistance antiviral-resistance hepatitis-c virus-evolution virus-genomes
F*
•0•1•2•0•Updated Oct 1, 2024Oct 1, 2024
Flavivirus-GLUE
Public
A GLUE project for comparative genomic analysis of flaviviruses
bioinformatics reproducible-research glue open-science comparative-genomics virus-evolution flavivirus paleovirology
JavaScript
•0•1•0•0•Updated Sep 27, 2024Sep 27, 2024
Parvovirus-GLUE-EVE
Public
Extension to Parvovirus-GLUE - incorporates endogenous parvoviral elements (EPVs)
JavaScript
•0•0•0•0•Updated Sep 27, 2024Sep 27, 2024
Hepadnaviridae-GLUE-EVE
Public
Extension to Hepadnaviridae-GLUE - incorporates endogenous hepatitis B viruses (eHBVs)
JavaScript
•0•1•0•0•Updated Sep 20, 2024Sep 20, 2024
Flavivirus-GLUE-EVE
Public
Extension to Flavivirus-GLUE - incorporates endogenous flaviviral elements (EFVs)
JavaScript
•0•0•0•0•Updated Sep 20, 2024Sep 20, 2024