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    9 repositories

    • Molecular-annotation-spec

      Public
      Rust
      •
      MIT License
      •0•2•2•0•Updated Dec 19, 2025Dec 19, 2025

    • fibertools-rs

      Public
      Tools for fiberseq data written in rust.
      Rust
      •8•62•6•1•Updated Dec 18, 2025Dec 18, 2025

    • fiberseq.github.io

      Public
      Source for "The computational guide to Fiber-seq"
      Python
      •1•4•0•1•Updated Nov 18, 2025Nov 18, 2025

    • FIRE

      Public
      A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.
      Python
      •
      MIT License
      •5•28•6•1•Updated Nov 12, 2025Nov 12, 2025

    • fiberseq-qc

      Public
      QC plots and statistics
      Shell
      •
      GNU General Public License v3.0
      •1•7•0•0•Updated Nov 7, 2025Nov 7, 2025

    • FiberHMM

      Public
      HMM-based footprint caller for Fiber-seq data
      Python
      •3•3•2•3•Updated Feb 19, 2025Feb 19, 2025

    • .github

      Public
      0•0•0•0•Updated Jul 25, 2024Jul 25, 2024

    • train-m6A-calling

      Public
      ML methods for m6A-calling
      Jupyter Notebook
      •
      MIT License
      •1•5•0•1•Updated Apr 18, 2024Apr 18, 2024

    • fiberseq-smk

      Public archive
      Snakemake pipeline for processing fiberseq data
      Python
      •
      MIT License
      •0•3•0•0•Updated Jan 11, 2024Jan 11, 2024