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@danforthcenter Donald Danforth Plant Science Center

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    145 repositories

    • plantcv

      Public
      Plant phenotyping with image analysis
      sciencebioinformaticsimage-analysis
      sciencebioinformaticsimage-analysisplant-phenotypingplantcv
      Python
      •
      Mozilla Public License 2.0
      •300•834•46•21•Updated Oct 7, 2026Oct 7, 2026

    • napari_naive_bayes_tutorial

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Oct 6, 2026Oct 6, 2026

    • plantcv-geospatial-tutorial-rgb

      Public
      RGB indicies Geospatial Tutorial
      Jupyter Notebook
      •
      Mozilla Public License 2.0
      •0•0•0•0•Updated Oct 6, 2026Oct 6, 2026

    • plantcv-geospatial-tutorial-plot-boundaries

      Public
      Tutorial for different types of plot boundaries using PlantCV-Geospatial.
      Jupyter Notebook
      •
      GNU General Public License v2.0
      •0•0•0•0•Updated Oct 6, 2026Oct 6, 2026

    • plantcv-geospatial-tutorial-analyze-color

      Public
      Tutorial for using PlantCV-Geospatial to analyze color and spectral indices
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Oct 5, 2026Oct 5, 2026

    • plantcv-geospatial-tutorial-flowering

      Public
      Tutorial for using PlantCV-Geospatial to estimate plant flowering
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •1•0•0•1•Updated Oct 2, 2026Oct 2, 2026

    • plantcv-geospatial-tutorial-plant-height

      Public
      Jupyter Notebook
      •
      GNU General Public License v2.0
      •0•0•0•1•Updated Oct 2, 2026Oct 2, 2026

    • plantcv-tutorial-bellwether

      Public
      Tutorial to analyze images from the Bellwether Phenotyping Facility at the Danforth Center.
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Oct 1, 2026Oct 1, 2026

    • plantcv-geospatial

      Public
      Geospatial add-on package to PlantCV
      Python
      •
      Mozilla Public License 2.0
      •2•6•14•8•Updated Sep 24, 2026Sep 24, 2026

    • PlantID

      Public
      Identifer system for plant phenotyping
      Python
      •
      Mozilla Public License 2.0
      •0•0•0•0•Updated Sep 22, 2026Sep 22, 2026

    • plantcv-tutorial-segment-image-series

      Public
      Tutorial for using PlantCV segment image series
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•1•Updated Sep 18, 2026Sep 18, 2026

    • panvaR

      Public
      A flexible tool for fine-mapping GWAS results
      gwasrrstats
      gwasrrstatsr-packagefine-mapping
      R
      •
      GNU General Public License v3.0
      •0•1•13•0•Updated Sep 8, 2026Sep 8, 2026

    • plantcv-tutorial-watershed

      Public
      watershed tutorial
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •1•3•0•0•Updated Sep 1, 2026Sep 1, 2026

    • plantcv-tutorial-vis-nir

      Public
      plantcv-tutorial-vis-nir
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Sep 1, 2026Sep 1, 2026

    • plantcv-tutorial-v4-VIS-single-plant

      Public
      PlantCV Tutorial using release-4.0 for single plant, VIS image (RGB) analysis
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •1•7•0•0•Updated Sep 1, 2026Sep 1, 2026

    • plantcv-tutorial-v4-multiobject

      Public
      Tutorial for analyzing multiple plants, leaves, or objects using PlantCV v4.
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•4•0•0•Updated Sep 1, 2026Sep 1, 2026

    • plantcv-tutorial-unsupervised-ml

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Sep 1, 2026Sep 1, 2026

    • plantcv-tutorial-tripsacum-seedhead

      Public
      A tutorial for open source image analysis for phenotyping seedheads of tripsacum dactyloides
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •1•0•0•0•Updated Sep 1, 2026Sep 1, 2026

    • plantcv-tutorial-threshold

      Public
      Tutorial for understanding Thresholding using PlantCV.
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •1•1•0•0•Updated Sep 1, 2026Sep 1, 2026

    • plantcv-tutorial-thermal

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•1•0•0•Updated Sep 1, 2026Sep 1, 2026

    • plantcv-tutorial-supervised-ml

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Sep 1, 2026Sep 1, 2026

    • plantcv-tutorial-simple-rgb-workflow

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •2•0•0•0•Updated Sep 1, 2026Sep 1, 2026

    • plantcv-tutorial-setaria-panicle

      Public
      Tutorial for using PlantCV for analysis of setaria panicle images for bristle count, panicle color and size.
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Sep 1, 2026Sep 1, 2026

    • plantcv-tutorial-seeds

      Public
      seed workflow tutorial
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•5•0•0•Updated Sep 1, 2026Sep 1, 2026

    • plantcv-tutorial-roi

      Public
      Tutorial for understanding Regions of Interest using PlantCV.
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Sep 1, 2026Sep 1, 2026

    • plantcv-tutorial-rice-chalkiness

      Public
      Tutorial for analyzing chalkiness in rice grains.
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Sep 1, 2026Sep 1, 2026

    • plantcv-tutorial-photosynthesis-multi

      Public
      Tutorial for using PlantCV for analysis of photosynthesis images that contain multiple objects (such as multiple plants or leaves).
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Sep 1, 2026Sep 1, 2026

    • plantcv-tutorial-photosynthesis

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •1•1•0•0•Updated Sep 1, 2026Sep 1, 2026

    • plantcv-tutorial-machine-learning

      Public
      Tutorial for analyzing image data using machine learning tools from PlantCV.
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •1•1•0•0•Updated Sep 1, 2026Sep 1, 2026

    • plantcv-tutorial-kmeans-clustering

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•1•Updated Sep 1, 2026Sep 1, 2026
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