Repositories list

• stampipes

  Public
  This is a focused collection of makefiles and scripts for analysis on Illumina sample data.

  Python

  •10•0•3•10•Updated Jan 28, 2026Jan 28, 2026

• bcl_barcode_count

  Public
  tally barcodes from Illumina sequencing machines

  Go

  •2•1•0•0•Updated Feb 28, 2021Feb 28, 2021

• picard-parser

  Public
  A parser for Picard output

  Python

  •2•0•0•0•Updated Apr 2, 2020Apr 2, 2020

• stampipes_test_data

  Public
  Holds test data for stampipes

  0•0•0•0•Updated Sep 10, 2018Sep 10, 2018

• modwt

  Public
  An efficient modwt wavelets package. This isn't the usual discrete wavelet transform found in, for example, gsl but an extended set of algorithms designed to o…

  C++

  •7•1•0•0•Updated Jan 12, 2018Jan 12, 2018

• bedops

  Public
  BEDOPS: high-performance genomic feature operations

  C

  •

  Other

  •62•0•0•0•Updated Dec 28, 2017Dec 28, 2017

• hotspot

  Public
  Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.

  Shell

  •

  GNU General Public License v2.0

  •15•2•0•0•Updated May 12, 2017May 12, 2017

• hotspot2_deprecated

  Public
  A faster implementation of hotspot

  Shell

  •0•0•0•0•Updated Feb 9, 2016Feb 9, 2016

• network-motifs

  Public
  network-motifs

  C++

  •

  GNU General Public License v2.0

  •1•0•0•0•Updated Aug 20, 2015Aug 20, 2015

• footprinting2012

  Public
  DNaseI Footprinting

  C++

  •

  GNU General Public License v2.0

  •3•4•0•0•Updated Jun 12, 2015Jun 12, 2015

• fastqc_parser

  Public
  A parser for turning FastQC results into an object useful for analysis with Python

  Python

  •3•0•0•0•Updated Feb 9, 2014Feb 9, 2014

• r-utilities

  Public
  A set of utilities for R

  Perl

  •1•0•0•0•Updated Nov 27, 2013Nov 27, 2013