Multi-omics Network Analytics Group

All

16 repositories

pubmed-rag
Public
A playground for RAG development from pubmed API
Jupyter Notebook
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MIT License
•1•3•0•0•Updated Nov 5, 2024Nov 5, 2024
acore
Public
Statistical functions to analyse multi-omics data
Python
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Other
•0•0•4•2•Updated Nov 5, 2024Nov 5, 2024
FermentDB
Public
FermentDB: A Database for High-cell Density Fermentations
Python
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Apache License 2.0
•0•0•0•0•Updated Nov 1, 2024Nov 1, 2024
MicW2Graph
Public
A knowledge graph of the wastewater treatment microbiome and its biological context
metagenomics knowledge-graph network-biology wastewater-treatment biolink-model streamlit-webapp
HTML
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MIT License
•0•3•0•0•Updated Oct 24, 2024Oct 24, 2024
course_protein_language_modeling
Public
education machine-learning course slides protein-sequences
Jupyter Notebook
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Apache License 2.0
•4•27•0•0•Updated Aug 13, 2024Aug 13, 2024
course_synthetic_biology_data
Public
Slides for lecture "Leveraging existing biological data and making sense of it" part of DTU's Summer School on Synthetic Biology for Cell Factories
education course slides
Apache License 2.0
•0•1•0•0•Updated Jun 24, 2024Jun 24, 2024
OrthoHPI2.0
Public
Jupyter Notebook
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MIT License
•0•0•0•0•Updated Jun 7, 2024Jun 7, 2024
Microbial_network_inference_and_analysis_MicW2Graph
Public
A repository with scripts to infer and analyze microbial association networks for the MicW2Graph project
Python
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MIT License
•0•0•0•0•Updated Jun 4, 2024Jun 4, 2024
Retrieve_info_MGnifyAPI
Public
Scripts to get information from MGnify programmatically using its API
Jupyter Notebook
•0•0•1•0•Updated Feb 20, 2024Feb 20, 2024
multiomics-analytics-group.github.io
Public
MoNA Group Website
HTML
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Other
•4k•0•0•0•Updated Sep 21, 2023Sep 21, 2023
cfb_data_club
Public
0•0•0•0•Updated May 10, 2023May 10, 2023
networks_to_study_microbes
Public
education course slides notebooks-jupyter
Jupyter Notebook
•1•0•0•0•Updated Mar 22, 2023Mar 22, 2023
ckg
Public
Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported from diverse biomedical databases 2) automate knowledge discovery making use of all the information contained in the graph
Jupyter Notebook
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MIT License
•98•1•0•0•Updated Dec 8, 2022Dec 8, 2022
orthohpi
Public
JavaScript
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MIT License
•0•0•0•0•Updated Aug 6, 2021Aug 6, 2021
PythonTsunami
Public
education course slides notebook-jupyter
Jupyter Notebook
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MIT License
•15•0•0•0•Updated Jun 9, 2021Jun 9, 2021
triqler
Public
The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code
Python
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Apache License 2.0
•10•0•0•0•Updated May 4, 2020May 4, 2020